Identification of key genes and pathways associated with diabetes of the exocrine pancreas. Issue 34 (26th August 2022)

• Record Type: Journal Article
• Authors: Yang, Zheng; Li, Shengqi; Liu, Huaying; Su, Qisheng; Li, Xiaohong; Qiu, Yulin; Mo, Wuning
• Is Part Of: Medicine. Volume 101:Issue 34(2022)
• Page Start: e29781
• Publication Date: 2022-08-26
• Subjects: diabetes of the exocrine pancreas -- enrichment analysis -- PPI network; Medicine -- Periodicals; Medicine -- Periodicals; Médecine -- Périodiques; Geneeskunde; Medicine; Periodicals; Periodicals; 610.5
• DOI: 10.1097/MD.0000000000029781
• Languages: English
• ISSNs: 0025-7974

Abstract

Abstract : This study aimed to identify potential essential genes and pathways in diabetes of the exocrine pancreas (DEP) and explore possible molecular mechanisms. The array dataset GSE76895 was downloaded from the Gene Expression Omnibus database. Pancreatic tissue samples from 20 Diabetes of the exocrine pancreas and 32 nondiabetic individuals were selected for analysis. GEO2R analyzed differentially expressed genes (DEGs) in the 2 groups. Gene ontology annotation, Kyoto Encyclopedia of Genes Genomes and Reactome pathway enrichment analyses and Gene Set Enrichment Analysis were performed in this study. Protein-protein interaction (PPI) networks were constructed using Cytoscape software, and core networks were identified using MCODE plugins. A total of 62 genes, including 59 up-regulated and 3 down-regulated genes, were differentially expressed in DEP samples compared with nondiabetic patients. PPI network with 53 nodes and 138 edges was established. HLA-DRA is identified as the central gene of the PPI network and maybe a marker gene for DEP. Furthermore, up-regulated DEGs are mainly enriched in pathways related to the immune system and infection. The results of this study suggest that HLA-DRA and immune system pathways may play essential roles in DEP.