Associations Between Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants and Risk of Coronavirus Disease 2019 (COVID-19) Hospitalization Among Confirmed Cases in Washington State: A Retrospective Cohort Study . (12th April 2022)

• Record Type: Journal Article
• Authors: Paredes, Miguel I; Lunn, Stephanie M; Famulare, Michael; Frisbie, Lauren A; Painter, Ian; Burstein, Roy; Roychoudhury, Pavitra; Xie, Hong; Mohamed Bakhash, Shah A; Perez, Ricardo; Lukes, Maria; Ellis, Sean; Sathees, Saraswathi; Mathias, Patrick C; Greninger, Alexander; Starita, Lea M; Frazar, Chris D; Ryke, Erica; Zhong, Weizhi; Gamboa, Luis; Threlkeld, Machiko; Lee, Jover; McDermot, Evan; Truong, Melissa; Nickerson, Deborah A; Bates, Daniel L; Hartman, Matthew E; Haugen, Eric; Nguyen, Truong N; Richards, Joshua D; Rodriguez, Jacob L; Stamatoyannopoulos, John A; Thorland, Eric; Melly, Geoff; Dykema, Philip E; MacKellar, Drew C; Gray, Hannah K; Singh, Avi; Peterson, JohnAric M; Russell, Denny; Torres, Laura Marcela; Lindquist, Scott; Bedford, Trevor; Allen, Krisandra J; Oltean, Hanna N;
• Is Part Of: Clinical infectious diseases. Volume 75:Number 1(2022)
• Page Start: e536
• Page End: e544
• Publication Date: 2022-04-12
• Subjects: COVID-19 -- SARS-CoV-2 -- variants -- hospitalization -- vaccination; Communicable diseases -- Periodicals; 616.905
• DOI: 10.1093/cid/ciac279
• Languages: English
• ISSNs: 1058-4838

Abstract

Abstract: Background: The coronavirus disease 2019 (COVID-19) pandemic is dominated by variant viruses; the resulting impact on disease severity remains unclear. Using a retrospective cohort study, we assessed the hospitalization risk following infection with 7 severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants. Methods: Our study includes individuals with positive SARS-CoV-2 reverse transcription polymerase chain reaction (RT-PCR) in the Washington Disease Reporting System with available viral genome data, from 1 December 2020 to 14 January 2022. The analysis was restricted to cases with specimens collected through sentinel surveillance. Using a Cox proportional hazards model with mixed effects, we estimated hazard ratios (HR) for hospitalization risk following infection with a variant, adjusting for age, sex, calendar week, and vaccination. Results: In total, 58 848 cases were sequenced through sentinel surveillance, of which 1705 (2.9%) were hospitalized due to COVID-19. Higher hospitalization risk was found for infections with Gamma (HR 3.20, 95% confidence interval [CI] 2.40–4.26), Beta (HR 2.85, 95% CI 1.56–5.23), Delta (HR 2.28 95% CI 1.56–3.34), or Alpha (HR 1.64, 95% CI 1.29–2.07) compared to infections with ancestral lineages; Omicron (HR 0.92, 95% CI .56–1.52) showed no significant difference in risk. Following Alpha, Gamma, or Delta infection, unvaccinated patients show higher hospitalization risk, while vaccinated patients show no significant difference in risk, both compared to unvaccinated, ancestral lineage cases. Hospitalization risk following Omicron infection is lower with vaccination. Conclusions: Infection with Alpha, Gamma, or Delta results in a higher hospitalization risk, with vaccination attenuating that risk. Our findings support hospital preparedness, vaccination, and genomic surveillance. Abstract : Hospitalization risk following infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variant remains unclear. We find a higher hospitalization risk in cases infected with Alpha, Beta, Gamma, and Delta, but not Omicron, with vaccination lowering risk. Our findings support hospital preparedness, vaccination, and genomic surveillance.