Brain tumor segmentation using a hybrid multi resolution U-Net with residual dual attention and deep supervision on MR images. (September 2022)

• Record Type: Journal Article
• Authors: Sahayam, Subin; Nenavath, Rahul; Jayaraman, Umarani; Prakash, Surya
• Is Part Of: Biomedical signal processing and control. Volume 78(2022)
• Publication Date: 2022-09
• Subjects: Brain tumor segmentation -- BraTS 2020 dataset -- Multi-resolution -- Residual block -- Dual attention -- Deep supervision; Signal processing -- Periodicals; Biomedical engineering -- Periodicals; Signal Processing, Computer-Assisted -- Periodicals; Image Processing, Computer-Assisted -- Periodicals; Biomedical Engineering -- Periodicals; 610.28
• DOI: 10.1016/j.bspc.2022.103939
• Languages: English
• ISSNs: 1746-8094

Abstract

Abstract: Manual identification of brain tumors in Magnetic Resonance (MR) images is laborious, time-consuming, and human error-prone. Automatic segmentation of brain tumors from MR images aims to bridge the gap. U-Net, a deep learning model, has delivered promising results in generating brain tumor segments. However, the model tends to over-segment the tumor volume than required. It will have a significant impact on deploying the model for practical use. In this work, the baseline U-Net model has been studied with the addition of residual, multi-resolution, dual attention, and deep supervision blocks. The goal of residual blocks is to efficiently extract features to reduce the semantic gap between low-level features from the decoder and high-level features from skip connections. The multiple resolution blocks have been added to extract features and analyze tumors of varying scales. The dual attention mechanism has been incorporated to highlight tumor representations and reduce over-segmentation. Finally, the deep supervision blocks have been added to utilize features from various decoder layers to obtain the target segmentation. The design of the proposed model has been justified with several experiments and ablation studies. The proposed model has been trained and evaluated on the BraTS2020 training and validation datasets. On the validation data, the proposed model has achieved a dice score of 0.60, 0.75, 0.62 for enhancing tumor (ET), whole tumor (WT), and tumor core (TC), respectively, and a Hausdorff 95 score of 46.84, 11.05, and 22.5, respectively. Compared to the baseline U-Net, the proposed model has outperformed WT and TC volumes in the Hausdorff 95 distance metric except for the ET volume.