The complete chloroplast genome of Gracilariopsis lemaneiformis, an important economic red alga of the family Gracilariaceae. Issue 1 (1st January 2016)

• Record Type: Journal Article
• Authors: Zhang, Yurong; Guo, Yuan-Ming; Li, Tie-Jun; Chen, Ching-Hung; Shen, Kang-Ning; Hsiao, Chung-Der
• Is Part Of: Mitochondrial DNA. Volume 1:Issue 1(2016)
• Page Start: 2
• Page End: 3
• Publication Date: 2016-01-01
• Subjects: Chloroplast genome -- Gracilariopsis lemaneiformis -- next-generation sequencing -- rhodophyta; Mitochondrial DNA -- Periodicals; 572.869
• DOI: 10.1080/23802359.2015.1137792
• Languages: English
• ISSNs: 2380-2359

Abstract

Abstract: The complete chloroplast DNA (cpDNA) of a famous red alga of the family Gracilariaceae, Gracilariopsis lemaneiformis, was deduced by using next-generation sequencing and de novo assembly technology. The complete cpDNA of G. lemaneiformis consists of 182 505 bp and encodes 230 unique genes consisting 204 protein-coding genes (PCGs), 21 transfer RNA genes, 3 ribosomal RNA genes, 1 transfer-messenger RNA genes and 1 non-coding RNA genes. Among 204 PCGs, ccsA gene is interrupted by a intron. Unlike the typical quadripartite structure (a pair of inverted repeats separated by the small single-copy and large single-copy units) of cpDNA in higher plants, the complete cpDNA of G. lemaneiformis is very compact, containing no inverted repeat and just one copy of rRNA gene cluster consisting of 16S, 23S and 5S rRNA genes. The genic regions account for 83.7% of whole cpDNA genome, and the G + C content of the cpDNA was 27.4%. The low G + C content of G. lemaneiformis cpDNA is largely contributed by high A + T content in the PCGs and non-coding regions. A phylogenetic analysis of the 15 complete cpDNA from rhodophyta shows that G. lemaneiformis is closely related to macroalga Gracilaria salicornia . The complete cpDNA of G. lemaneiformis provides essential and important DNA molecular data for further phylogenetic and evolutionary analysis for rhodophyta.