SimBSI: An open-source Simulink library for developing closed-loop brain signal interfaces in animals and humans. (10th April 2020)

• Record Type: Journal Article
• Authors: Ojeda, Alejandro; Buscher, Nathalie; Balasubramani, Pragathi; Maric, Vojislav; Ramanathan, Dhakshin; Mishra, Jyoti
• Is Part Of: Biomedical physics & engineering express. Volume 6:Number 3(2020)
• Publication Date: 2020-04-10
• Subjects: Simulink -- Lab Streaming Layer -- online EEG source imaging -- closed-loop -- brain-computer interface -- cross-species; Medical physics -- Periodicals; Biophysics -- Periodicals; Biomedical engineering -- Periodicals; Medical sciences -- Periodicals; 610.153
• DOI: 10.1088/2057-1976/ab6e20
• Languages: English
• ISSNs: 2057-1976

Abstract

Abstract: Objective. A promising application of BCI technology is in the development of personalized therapies that can target neural circuits linked to mental or physical disabilities. Typical BCIs, however, offer limited value due to simplistic designs and poor understanding of the conditions being treated. Building BCIs on more solid grounds may require the characterization of the brain dynamics supporting cognition and behavior at multiple scales, from single-cell and local field potential (LFP) recordings in animals to non-invasive electroencephalography (EEG) in humans. Despite recent efforts, a unifying software framework to support closed-loop studies in both animals and humans is still lacking. The objective of this paper is to develop such a unifying neurotechnological software framework. Approach. Here we develop the Simulink for Brain Signal Interfaces library (SimBSI). Simulink is a mature graphical programming environment within MATLAB that has gained traction for processing electrophysiological data. SimBSI adds to this ecosystem: 1) advanced human EEG source imaging, 2) cross-species multimodal data acquisition based on the Lab Streaming Layer library, and 3) a graphical experimental design platform. Main results. We use several examples to demonstrate the capabilities of the library, ranging from simple signal processing, to online EEG source imaging, cognitive task design, and closed-loop neuromodulation. We further demonstrate the simplicity of developing a sophisticated experimental environment for rodents within this environment. Significance. With the SimBSI library we hope to aid BCI practitioners of dissimilar backgrounds in the development of, much needed, single and cross-species closed-loop neuroscientific experiments. These experiments may provide the necessary mechanistic data for BCIs to become effective therapeutic tools.