Bias correction for multiple covariate analysis using empirical bayesian estimation in mixed-effects models for longitudinal data. (August 2022)

• Record Type: Journal Article
• Authors: Li, Yi; Yang, Yaning; Xu, Xu Steven; Yuan, Min
• Is Part Of: Computational biology and chemistry. Volume 99(2022)
• Publication Date: 2022-08
• Subjects: Empirical Bayes estimates -- Shrinkage factor -- Multiple mixed-effect model -- Longitudinal data -- Maximum likelihood estimates; Chemistry -- Data processing -- Periodicals; Biology -- Data processing -- Periodicals; Biochemistry -- Data processing; Biology -- Data processing; Molecular biology -- Data processing; Periodicals; Electronic journals; 542.85
• DOI: 10.1016/j.compbiolchem.2022.107697
• Languages: English
• ISSNs: 1476-9271

Abstract

Abstract: The naïve empirical Bayes method has been widely used as an ad hoc tool in fitting linear mixed-effect models, which is much computationally efficient than the maximum likelihood estimation method. However, the shrinkage effect of the empirical Bayes method causes bias in the estimates of the fixed effects. Bias-correction has been proposed for the mixed-effects model when only one covariate is present. In this paper, we derive the shrinkage factor of the empirical Bayes predictors of the random effects and the variance-covariance matrix of the corrected estimates when the model has more than one covariate. The empirical Bayes estimates and test statistics are then corrected using the derived factor. Theoretical derivations, simulation studies and a real data application demonstrate the validity of the proposed method in that the corrected estimates are unbiased and the corrected tests have correct p-values. Graphical Abstract: ga1 Highlights: Mixed-effects model can improve statistical power; however, EBE will give biased estimates due to shrinkage. mSCEBE can correct for the bias of EBE to produce unbiased estimates and p-values in mixed-effects models. mSCEBE is applicable to the general situation that multiple covariates have effects on multiple random effect parameters.