A lightweight 3D UNet model for glioma grading. (7th August 2022)

• Record Type: Journal Article
• Authors: Yu, Xuan; Wu, Yaping; Bai, Yan; Han, Hui; Chen, Lijuan; Gao, Haiyan; Wei, Huanhuan; Wang, Meiyun
• Is Part Of: Physics in medicine & biology. Volume 67:Number 15(2022)
• Publication Date: 2022-08-07
• Subjects: lightweight 3D UNet -- glioma grading -- depthwise separable convolution -- scSE block -- MRIs; Biophysics -- Periodicals; Medical physics -- Periodicals; 610.153
• DOI: 10.1088/1361-6560/ac7d33
• Languages: English
• ISSNs: 0031-9155

Abstract

Abstract: Objective . Glioma is one of the most fatal cancers in the world which has been divided into low grade glioma (LGG) and high grade glioma (HGG), and its image grading has become a hot topic of contemporary research. Magnetic resonance imaging (MRI) is a vital diagnostic tool for brain tumor detection, analysis, and surgical planning. Accurate and automatic glioma grading is crucial for speeding up diagnosis and treatment planning. Aiming at the problems of (1) large number of parameters, (2) complex calculation, and (3) poor speed of the current glioma grading algorithms based on deep learning, this paper proposes a lightweight 3D UNet deep learning framework, which can improve classification accuracy in comparison with the existing methods. Approach . To improve efficiency while maintaining accuracy, existing 3D UNet has been excluded, and depthwise separable convolution has been applied to 3D convolution to reduce the number of network parameters. The weight of parameters on the basis of space and channel compression & excitation module has been strengthened to improve the model in the feature map, reduce the weight of redundant parameters, and strengthen the performance of the model. Main results . A total of 560 patients with glioma were retrospectively reviewed. All patients underwent MRI before surgery. The experiments were carried out on T1w, T2w, fluid attenuated inversion recovery, and CET1w images. Additionally, a way of marking tumor area by cube bounding box is presented which has no significant difference in model performance with the manually drawn ground truth. Evaluated on test datasets using the proposed model has shown good results (with accuracy of 89.29%). Significance . This work serves to achieve LGG/HGG grading by simple, effective, and non-invasive diagnostic approaches to provide diagnostic suggestions for clinical usage, thereby facilitating hasten treatment decisions.