Exome sequencing in patients with microphthalmia, anophthalmia, and coloboma (MAC) from a consanguineous population. Issue 5 (3rd September 2020)

• Record Type: Journal Article
• Authors: Islam, Farrah; Htun, Stephanie; Lai, Li‐Wen; Krall, Max; Poranki, Menitha; Martin, Pierre‐Marie; Sobreira, Nara; Wohler, Elizabeth S.; Yu, Jingwei; Moore, Anthony T.; Slavotinek, Anne M.
• Is Part Of: Clinical genetics. Volume 98:Issue 5(2020)
• Page Start: 499
• Page End: 506
• Publication Date: 2020-09-03
• Subjects: Anophthalmia -- cataract -- CDON -- Coloboma -- Microphthalmia -- TENM3; Medical genetics -- Periodicals; 616.0420
• DOI: 10.1111/cge.13830
• Languages: English
• ISSNs: 0009-9163

Abstract

Abstract: Next‐generation sequencing strategies have resulted in mutation detection rates of 21% to 61% in small cohorts of patients with microphthalmia, anophthalmia and coloboma (MAC), but despite progress in identifying novel causative genes, many patients remain without a genetic diagnosis. We studied a cohort of 19 patients with MAC who were ascertained from a population with high rates of consanguinity. Using single nucleotide polymorphism (SNP) arrays and whole exome sequencing (WES), we identified one pathogenic variant in TENM3 in a patient with cataracts in addition to MAC. We also detected novel variants of unknown significance in genes that have previously been associated with MAC, including KIF26B, MICU1 and CDON, and identified variants in candidate genes for MAC from the Wnt signaling pathway, comprising LRP6, WNT2B and IQGAP1, but our findings do not prove causality. Plausible variants were not found for many of the cases, indicating that our current understanding of the pathogenesis of MAC, a highly heterogeneous group of ocular defects, remains incomplete. Abstract : We studied 19 patients with microphthalmia, anophthalmia and coloboma (MAC) with single nucleotide polymorphism (SNP) arrays and whole exome sequencing (WES). We identified one pathogenic variant in TENM3 in a patient with MAC and cataracts and detected variants of unknown significance in genes that have previously been associated with MAC and in genes from the Wnt signaling pathway, including KIF26B, MICU1, CDON, LRP6, WNT2B and IQGAP1 . However, our current understanding of the genetic causes of MAC remains incomplete.