MetOrigin: Discriminating the origins of microbial metabolites for integrative analysis of the gut microbiome and metabolome. Issue 1 (21st March 2022)

• Record Type: Journal Article
• Authors: Yu, Gang; Xu, Cuifang; Zhang, Danni; Ju, Feng; Ni, Yan
• Is Part Of: IMeta. Volume 1:Issue 1(2022)
• Page Start: n/a
• Page End: n/a
• Publication Date: 2022-03-21
• Subjects: correlation analysis -- gut microbiome and metabolome -- metabolic pathway enrichment analysis -- origins of metabolites -- Sankey network; Metagenomics -- Periodicals; Bioinformatics -- Periodicals; Bioinformatics; Metagenomics; Metagenomics; Metagenome; Computational Biology; Periodicals; Periodical; 576.5
• DOI: 10.1002/imt2.10
• Languages: English
• ISSNs: 2770-596X

Abstract

Abstract: The interactions between the gut microbiome and metabolome play an important role in human health and diseases. Current studies mainly apply statistical correlation analysis between the gut microbiome and all the identified metabolites to explore their relationship. However, it remains challenging to identify the specific metabolic functions of microbes without in vitro culture experiments for validation. Discriminating the microbial metabolites from others (e.g., host, food, or environment) and exploring their metabolic functions and correlations with microbiome specifically may improve the efficiency and accuracy of biomarker discovery. So far, there have been no such bioinformatics tools available. Herein, we developed MetOrigin, an interactive web server that discriminates metabolites originating from the microbiome, performs the origin‐based metabolic pathway enrichment analysis, and integrates the statistical correlations and biological relationships in the database using Sankey network visualization. MetOrigin not only enables the quick identification of microbial metabolites and their metabolic functions but also facilitates the discovery of specific bacterial species that are closely associated with metabolites statistically and biologically. MetOrigin is freely available at http://metorigin.met-bioinformatics.cn/ . Abstract : MetOrigin provides the quick identification of microbiota‐related metabolites and their metabolic functions in metabolomics studies. MetOrigin integrates statistical and biological correlations using Sankey network visualization to identify specific microbes associated with metabolites of interest. MetOrigin is a web server of microbiome and metabolome data integration analysis, and it is freely available at http://metorigin.met-bioinformatics.cn/ . Highlights: MetOrigin provides the quick identification of microbiota‐related metabolites and their metabolic functions in metabolomics studies. MetOrigin integrates statistical and biological correlations using Sankey network visualization to identify specific microbes associated with metabolites of interest. MetOrigin is a web server of microbiome and metabolome data integration analysis, and it is freely available at http://metorigin.met-bioinformatics.cn/ .