Experimental and theoretical approaches on structural, spectroscopic (FT‐IR and UV‐Vis), nonlinear optical, and molecular docking analyses for Zn (II) and Cu (II) complexes of 6‐chloropyridine‐2‐carboxylic acid. (5th April 2022)

• Record Type: Journal Article
• Authors: Dege, Necmi; Tamer, Ömer; Şimşek, Merve; Avcı, Davut; Yaman, Mavişe; Başoğlu, Adil; Atalay, Yusuf
• Is Part Of: Applied organometallic chemistry. Volume 36:Number 6(2022)
• Page Start: n/a
• Page End: n/a
• Publication Date: 2022-04-05
• Subjects: DFT -- molecular docking -- NLO -- SARS‐CoV‐2 -- 6‐Chloropyridine‐2‐carboxylic acid; Organometallic chemistry -- Periodicals; Organometallic compounds -- Periodicals; 547.05
• DOI: 10.1002/aoc.6678
• Languages: English
• ISSNs: 0268-2605

Abstract

Abstract: Novel transition metal‐based complexes that may be of value as biological agents and/or nonlinear optical materials, Zn (II) and Cu (II) transition metal complexes of 6‐chloropyridine‐2‐carboxylic acid (LH), were successfully synthesized. The chemical structure of each complex was characterized using X‐ray diffraction (XRD) method and FT‐IR spectroscopy. XRD and FT‐IR demonstrated that L ligand coordinate to central metal ions through the donor N and O atoms. By coordinating two H2 O ligand to Zn (II) ion, a distorted octahedral complex geometry was constructed for 1 . As for 2, a distorted trigonal bipyramidal coordination geometry was obtained by a H2 O ligand coordination to Cu (II) ion. Theoretical studies using B3LYP/6‐311++G(d, p)‐LanL2DZ were performed to further validate the proposed structures. The molecular docking of 1 to SARS‐CoV‐2 main protease (PDB: 6LU7) gives a binding energy of −5.24 kcal/mol and inhibition constant of 144.6 μM, demonstrating that 1 is a more promising candidate to biologically active complexes than 2 . The first‐order hyperpolarizability (β) parameter for 1 and 2 was calculated as 0.88 × 10 −30 and 10.40 × 10 −30 esu, respectively. These β values also demonstrated that 2 exhibits more effective NLO character than 1 due to the electronic configuration and coordination geometry. Abstract : The crystal structures, spectroscopic (IR and UV‐Vis), nonlinear optical and molecular docking properties of newly synthesized Zn (II) and Cu (II) transition metal complexes (1 and 2) of 6‐chloropyridine‐2‐carboxylic acid were successfully investigated. The Cu(II) complex has superior NLO properties compared to the Zn(II) complex. On the other hand, Zn(II) complex was found to be more effective in terms of inhibition constant and binding affinity to SARS‐CoV‐2 main protease.