A web-based tool for automatically linking clinical trials to their publications. (10th January 2022)

• Record Type: Journal Article
• Authors: Smalheiser, Neil R; Holt, Arthur W
• Is Part Of: Journal of the American Medical Informatics Association. Volume 29:Number 5(2022)
• Page Start: 822
• Page End: 830
• Publication Date: 2022-01-10
• Subjects: clinical trials as topic -- ClinicalTrials.gov -- evidence-based medicine -- bibliometrics -- systematic reviews; Medical informatics -- Periodicals; Information Services -- Periodicals; Medical Informatics -- Periodicals; Médecine -- Informatique -- Périodiques; Informatica; Geneeskunde; Informatique médicale; Computer network resources; Electronic journals; 610.285
• DOI: 10.1093/jamia/ocab290
• Languages: English
• ISSNs: 1067-5027

Abstract

Abstract: Objective: Evidence synthesis teams, physicians, policy makers, and patients and their families all have an interest in following the outcomes of clinical trials and would benefit from being able to evaluate both the results posted in trial registries and in the publications that arise from them. Manual searching for publications arising from a given trial is a laborious and uncertain process. We sought to create a statistical model to automatically identify PubMed articles likely to report clinical outcome results from each registered trial in ClinicalTrials.gov . Materials and Methods: A machine learning-based model was trained on pairs (publications known to be linked to specific registered trials). Multiple features were constructed based on the degree of matching between the PubMed article metadata and specific fields of the trial registry, as well as matching with the set of publications already known to be linked to that trial. Results: Evaluation of the model using known linked articles as gold standard showed that they tend to be top ranked (median best rank = 1.0), and 91% of them are ranked in the top 10. Discussion: Based on this model, we have created a free, public web-based tool that, given any registered trial in ClinicalTrials.gov, presents a ranked list of the PubMed articles in order of estimated probability that they report clinical outcome data from that trial. The tool should greatly facilitate studies of trial outcome results and their relation to the original trial designs.