Using 3dRNA for RNA 3‐D Structure Prediction and Evaluation. Issue 1 (2nd May 2017)

• Record Type: Journal Article
• Authors: Wang, Jian; Xiao, Yi
• Editors: Bateman, Alex; Pearson, William R.; Stein, Lincoln D.; Stormo, Gary D.; Yates, John R.
• Is Part Of: Current protocols in bioinformatics. Volume 57:Issue 1(2017)
• Page Start: 5.9.1
• Page End: 5.9.12
• Publication Date: 2017-05-02
• Subjects: 3dRNA -- 3dRNAscore -- RNA -- 3‐D structure prediction -- 3‐D structure evaluation; Bioinformatics -- Laboratory manuals; Nucleotide sequence -- Laboratory manuals; Amino acid sequence -- Laboratory manuals; Base Sequence; Amino Acid Sequence; Computational Biology -- methods; Databases, Genetic; Proteins -- analysis; Sequence Analysis -- methods; Sequence Homology; Amino acid sequence; Bioinformatics; Nucleotide sequence; Laboratory Manuals; Laboratory manuals; 570.285
• DOI: 10.1002/cpbi.21
• Languages: English
• ISSNs: 1934-3396

Abstract

Abstract: This unit describes how to use 3dRNA to predict RNA 3‐D structures from their sequences and secondary (2‐D) structures, and how to use 3dRNAscore to evaluate the predicted structures. The predicted RNA 3‐D structures can be used to predict or understand their functions and can also be used to find the interactions between the RNA and other molecules. © 2017 by John Wiley & Sons, Inc.