The pathological tissue expression pattern and clinical significance of m6A‐regulatory genes in non‐small cell lung cancer. (1st December 2021)

• Record Type: Journal Article
• Authors: Li, Yujie; Zhang, Xin; Cai, Junchao; Ren, Liangliang; Liu, Baoyi; Wu, Meimei; Lu, Wenjie; Li, Ronggang; Zhang, Chunlai; Huang, Chaowen; Tong, Jinzhai; Liu, Aibin; Zheng, Yan; Ren, Dong; Guo, Yubiao; Huang, Yanming
• Is Part Of: Journal of gene medicine. Volume 24:Number 2(2022)
• Page Start: n/a
• Page End: n/a
• Publication Date: 2021-12-01
• Subjects: bioinformatics -- immunohistochemistry -- m6A regulatory protein -- NSCLC; Genetic transformation -- Periodicals; Gene Transfer -- Periodicals; Gene Therapy -- Periodicals; 616.042
• DOI: 10.1002/jgm.3397
• Languages: English
• ISSNs: 1099-498X

Abstract

Abstract: Background: Aberrant expression of m6A‐related proteins contributes to the occurrence and progression of non‐small cell lung cancer (NSCLC). Current studies mainly focus on single m6A regulatory genes and their underlying mechanisms, and the expression of multiple m6A regulatory proteins in NSCLC remains unclear. Therefore, it is necessary to systematically examine these proteins, particularly in clinical specimens. Methods: Bioinformatic analysis was used to determine the expression of m6A regulatory genes and their correlation with common gene mutations, such as TP53, EGFR and KRAS, using The Cancer Genome Atlas (TCGA) and the AE‐meta databases. Immunohistochemistry was employed to analyze the protein expression of m6A regulatory proteins in 61 benign lung tissues and 316 NSCLC tissues. Statistical analysis was performed to calculate the correlation between the expression of m6A regulatory proteins and clinicopathological features, survival, and common gene mutations in lung carcinoma patients. Results: Analysis of the mRNA levels of 13 core m6A regulators, using information from TCGA and the AE‐meta databases, revealed that YTHDF1 levels were upregulated in NSCLC compared to those in adjacent normal tissues. Immunohistochemical staining showed that the expression of METTL3, ALKBH5, YTHDC2 and YTHDF1 was significantly upregulated in NSCLC tissues. Further analyses demonstrated a positive correlation between differentially expressed m6A regulatory proteins, including METTL3, ALKBH5, YTHDC2 and YTHDF1, and the poor clinicopathological features and survival of NSCLC patients. According to the statistics of NSCLC patients enrolled in the present study, the protein levels of METTL3 in patients with EGFR exon‐19 mutation were higher than those in patients with wild‐type EGFR . Conclusions: Our results indicate that m6A regulators, including METTL3, ALKBH5, YTHDC2 and YTHDF1, could serve as predictive markers of NSCLC, which will facilitate the early detection and diagnosis of NSCLC. Abstract : Univariate Cox regression analysis revealed that age (> 65 years), T classification (T2–4), M classification (M1), stage (II –IV) and high expression levels of METTL3, YTHDC2 and YTHDF1 proteins were risk factors for progression‐free survival (PFS) in non‐small cell lung cancer (NSCLC) patients. Combined with the above risk factors, a risk model can be established to predict the prognosis of PFS in NSCLC patients.