The mechanism of Raf activation through dimerization. Issue 47 (24th November 2021)

• Record Type: Journal Article
• Authors: Zhang, Mingzhen; Maloney, Ryan; Jang, Hyunbum; Nussinov, Ruth
• Is Part Of: Chemical science. Volume 12:Issue 47(2021)
• Page Start: 15609
• Page End: 15619
• Publication Date: 2021-11-24
• Subjects: Chemistry -- Periodicals; 540.5
• DOI: 10.1039/d1sc03444h
• Languages: English
• ISSNs: 2041-6520

Abstract

Abstract : We decipher an atomic-level mechanism of Raf activation through dimerization, revealing that the disruption of intramolecular π–π stacking at the dimer interface promotes the OFF-to-ON transition. Abstract : Raf, a threonine/serine kinase in the Raf/MEK/ERK pathway, regulates cell proliferation. Raf's full activation requires dimerization. Aberrant activation through dimerization is an important therapeutic target. Despite its clinical importance, fundamental questions, such as how the side-to-side dimerization promotes the OFF-to-ON transition of Raf's kinase domain and how the fully activated ON-state kinase domain is stabilized in the dimer for Raf signaling, remain unanswered. Herein, we decipher an atomic-level mechanism of Raf activation through dimerization, clarifying this enigma. The mechanism reveals that the replacement of intramolecular π–π stacking by intermolecular π–π stacking at the dimer interface releases the structural constraint of the αC-helix, promoting the OFF-to-ON transition. During the transition, the inhibitory hydrophobic interactions were disrupted, making the phosphorylation sites in A-loop approach the HRD motif for cis -autophosphorylation. Once fully activated, the ON-state kinase domain can be stabilized by a newly identified functional N-terminal basic (NtB) motif in the dimer for Raf signaling. This work provides atomic level insight into critical steps in Raf activation and outlines a new venue for drug discovery against Raf dimerization.