Data-driven approaches used for compound library design, hit triage and bioactivity modeling in high-throughput screening. (27th October 2016)

• Record Type: Journal Article
• Authors: Paricharak, Shardul; Méndez-Lucio, Oscar; Chavan Ravindranath, Aakash; Bender, Andreas; IJzerman, Adriaan P; van Westen, Gerard J P
• Is Part Of: Briefings in bioinformatics. Volume 19:Number 2(2018:Mar.)
• Page Start: 277
• Page End: 285
• Publication Date: 2016-10-27
• Subjects: phenotypic assays -- library design -- screening paradigms; Genetics -- Data processing -- Periodicals; Molecular biology -- Data processing -- Periodicals; Genomes -- Data processing -- Periodicals; 572.80285
• DOI: 10.1093/bib/bbw105
• Languages: English
• ISSNs: 1467-5463

Abstract

Abstract: High-throughput screening (HTS) campaigns are routinely performed in pharmaceutical companies to explore activity profiles of chemical libraries for the identification of promising candidates for further investigation. With the aim of improving hit rates in these campaigns, data-driven approaches have been used to design relevant compound screening collections, enable effective hit triage and perform activity modeling for compound prioritization. Remarkable progress has been made in the activity modeling area since the recent introduction of large-scale bioactivity-based compound similarity metrics. This is evidenced by increased hit rates in iterative screening strategies and novel insights into compound mode of action obtained through activity modeling. Here, we provide an overview of the developments in data-driven approaches, elaborate on novel activity modeling techniques and screening paradigms explored and outline their significance in HTS.