Development and validation of a prediction model for actionable aspects of frailty in the text of clinicians' encounter notes. (13th November 2021)

• Record Type: Journal Article
• Authors: Martin, Jacob A; Crane-Droesch, Andrew; Lapite, Folasade C; Puhl, Joseph C; Kmiec, Tyler E; Silvestri, Jasmine A; Ungar, Lyle H; Kinosian, Bruce P; Himes, Blanca E; Hubbard, Rebecca A; Diamond, Joshua M; Ahya, Vivek; Sims, Michael W; Halpern, Scott D; Weissman, Gary E
• Is Part Of: Journal of the American Medical Informatics Association. Volume 29:Number 1(2022)
• Page Start: 109
• Page End: 119
• Publication Date: 2021-11-13
• Subjects: natural language processing -- machine learning -- frailty -- population health management -- decision support systems -- clinical; Medical informatics -- Periodicals; Information Services -- Periodicals; Medical Informatics -- Periodicals; Médecine -- Informatique -- Périodiques; Informatica; Geneeskunde; Informatique médicale; Computer network resources; Electronic journals; 610.285
• DOI: 10.1093/jamia/ocab248
• Languages: English
• ISSNs: 1067-5027

Abstract

Abstract: Objective: Frailty is a prevalent risk factor for adverse outcomes among patients with chronic lung disease. However, identifying frail patients who may benefit from interventions is challenging using standard data sources. We therefore sought to identify phrases in clinical notes in the electronic health record (EHR) that describe actionable frailty syndromes. Materials and Methods: We used an active learning strategy to select notes from the EHR and annotated each sentence for 4 actionable aspects of frailty: respiratory impairment, musculoskeletal problems, fall risk, and nutritional deficiencies. We compared the performance of regression, tree-based, and neural network models to predict the labels for each sentence. We evaluated performance with the scaled Brier score (SBS), where 1 is perfect and 0 is uninformative, and the positive predictive value (PPV). Results: We manually annotated 155 952 sentences from 326 patients. Elastic net regression had the best performance across all 4 frailty aspects (SBS 0.52, 95% confidence interval [CI] 0.49–0.54) followed by random forests (SBS 0.49, 95% CI 0.47–0.51), and multi-task neural networks (SBS 0.39, 95% CI 0.37–0.42). For the elastic net model, the PPV for identifying the presence of respiratory impairment was 54.8% (95% CI 53.3%–56.6%) at a sensitivity of 80%. Discussion: Classification models using EHR notes can effectively identify actionable aspects of frailty among patients living with chronic lung disease. Regression performed better than random forest and neural network models. Conclusions: NLP-based models offer promising support to population health management programs that seek to identify and refer community-dwelling patients with frailty for evidence-based interventions.