The Etiology of Pneumonia From Analysis of Lung Aspirate and Pleural Fluid Samples: Findings From the Pneumonia Etiology Research for Child Health (PERCH) Study. (25th July 2020)

• Record Type: Journal Article
• Authors: Ebruke, Bernard E; Deloria Knoll, Maria; Haddix, Meredith; Zaman, Syed M A; Prosperi, Christine; Feikin, Daniel R; Hammitt, Laura L; Levine, Orin S; O'Brien, Katherine L; Murdoch, David R; Brooks, W Abdullah; Scott, J Anthony G; Kotloff, Karen L; Madhi, Shabir A; Thea, Donald M; Baillie, Vicky L; Chisti, Mohammod Jobayer; Dione, Michel; Driscoll, Amanda J; Fancourt, Nicholas; Karron, Ruth A; Le, Tham T; Mohamed, Shebe; Moore, David P; Morpeth, Susan C; Mwaba, John; Mwansa, James; Bin Shahid, Abu Sadat Mohammad Sayeem; Sow, Samba O; Tapia, Milagritos D; Antonio, Martin; Howie, Stephen R C;
• Is Part Of: Clinical infectious diseases. Volume 73:Number 11(2021)
• Page Start: e3788
• Page End: e3796
• Publication Date: 2020-07-25
• Subjects: lung aspirate -- pleural fluid aspirate -- PERCH -- pneumonia -- etiology childhood; Communicable diseases -- Periodicals; 616.905
• DOI: 10.1093/cid/ciaa1032
• Languages: English
• ISSNs: 1058-4838

Abstract

Abstract: Background: An improved understanding of childhood pneumonia etiology is required to inform prevention and treatment strategies. Lung aspiration is the gold standard specimen for pneumonia diagnostics. We report findings from analyses of lung and pleural aspirates collected in the Pneumonia Etiology Research for Child Health (PERCH) study. Methods: The PERCH study enrolled children aged 1–59 months hospitalized with World Health Organization–defined severe or very severe pneumonia in 7 countries in Africa and Asia. Percutaneous transthoracic lung aspiration (LA) and pleural fluid (PF) aspiration was performed on a sample of pneumonia cases with radiological consolidation and/or PF in 4 countries. Venous blood and nasopharyngeal/oropharyngeal swabs were collected from all cases. Multiplex quantitative polymerase chain reaction (PCR) and routine microbiologic culture were applied to clinical specimens. Results: Of 44 LAs performed within 3 days of admission on 622 eligible cases, 13 (30%) had a pathogen identified by either culture (5/44) or by PCR (11/29). A pathogen was identified in 12/14 (86%) PF specimens tested by either culture (9/14) or PCR (9/11). Bacterial pathogens were identified more frequently than viruses. All but 1 of the cases with a virus identified were coinfected with bacterial pathogens. Streptococcus pneumoniae (9/44 [20%]) and Staphylococcus aureus (7/14 [50%]) were the predominant pathogens identified in LA and PF, respectively. Conclusions: Bacterial pathogens predominated in this selected subgroup of PERCH participants drawn from those with radiological consolidation or PF, with S. pneumoniae and S. aureus the leading pathogens identified. Abstract : Lung aspiration (LA) and pleural fluid (PF) aspiration were performed on a subgroup of PERCH pneumonia cases with radiological consolidation or PF collection. Bacterial pathogens predominated ( Streptococcus pneumoniae in LA, Staphylococcus aureus in PF), in contrast to overall PERCH findings.