Fitbeat: COVID-19 estimation based on wristband heart rate using a contrastive convolutional auto-encoder. (March 2022)

• Record Type: Journal Article
• Authors: Liu, Shuo; Han, Jing; Puyal, Estela Laporta; Kontaxis, Spyridon; Sun, Shaoxiong; Locatelli, Patrick; Dineley, Judith; Pokorny, Florian B.; Costa, Gloria Dalla; Leocani, Letizia; Guerrero, Ana Isabel; Nos, Carlos; Zabalza, Ana; Sørensen, Per Soelberg; Buron, Mathias; Magyari, Melinda; Ranjan, Yatharth; Rashid, Zulqarnain; Conde, Pauline; Stewart, Callum; Folarin, Amos A; Dobson, Richard JB; Bailón, Raquel; Vairavan, Srinivasan; Cummins, Nicholas; Narayan, Vaibhav A; Hotopf, Matthew; Comi, Giancarlo; Schuller, Björn; Consortium, RADAR-CNS
• Is Part Of: Pattern recognition. Volume 123(2022)
• Publication Date: 2022-03
• Subjects: COVID-19 -- Respiratory tract infection -- Anomaly detection -- Contrastive learning -- Convolutional auto-encoder; Pattern perception -- Periodicals; Perception des structures -- Périodiques; Patroonherkenning; 006.4
• DOI: 10.1016/j.patcog.2021.108403
• Languages: English
• ISSNs: 0031-3203

Abstract

Highlights: Heart rate based identification of individuals with suspected COVID-19 infection. Semi-supervised framework using combination of auto-encoder and contrastive loss. Contrastive convolutional auto-encoder is capable of finding proper latent attributes. COVID-19 estimation performance declines with data shifted from symptom reported date. Abstract: This study proposes a contrastive convolutional auto-encoder (contrastive CAE), a combined architecture of an auto-encoder and contrastive loss, to identify individuals with suspected COVID-19 infection using heart-rate data from participants with multiple sclerosis (MS) in the ongoing RADAR-CNS mHealth research project. Heart-rate data was remotely collected using a Fitbit wristband. COVID-19 infection was either confirmed through a positive swab test, or inferred through a self-reported set of recognised symptoms of the virus. The contrastive CAE outperforms a conventional convolutional neural network (CNN), a long short-term memory (LSTM) model, and a convolutional auto-encoder without contrastive loss (CAE). On a test set of 19 participants with MS with reported symptoms of COVID-19, each one paired with a participant with MS with no COVID-19 symptoms, the contrastive CAE achieves an unweighted average recall of 95.3 %, a sensitivity of 100 % and a specificity of 90.6 %, an area under the receiver operating characteristic curve (AUC-ROC) of 0.944, indicating a maximum successful detection of symptoms in the given heart rate measurement period, whilst at the same time keeping a low false alarm rate.