Translational suppression of SARS-COV-2 ORF8 protein mRNA as a Viable therapeutic target against COVID-19: Computational studies on potential roles of isolated compounds from Clerodendrum volubile leaves. (December 2021)

• Record Type: Journal Article
• Authors: Erukainure, Ochuko L.; Atolani, Olubunmi; Muhammad, Aliyu; Ravichandran, Rahul; Abarshi, Musa M.; Katsayal, Sanusi B.; Chukwuma, Chika I.; Preissner, Robert; Banerjee, Priyanka; Mesaik, M. Ahmed
• Is Part Of: Computers in biology and medicine. Volume 139(2021)
• Publication Date: 2021-12
• Subjects: Clerodendrum volubile -- COVID-19 -- Cytokine storm -- Iridoid glycoside -- ORF8 -- And SARS-CoV-2; Medicine -- Data processing -- Periodicals; Biology -- Data processing -- Periodicals; 610.285
• DOI: 10.1016/j.compbiomed.2021.104964
• Languages: English
• ISSNs: 0010-4825

Abstract

Abstract: The open reading frame 8 (ORF8) protein of SARS-CoV-2 has been implicated in the onset of cytokine storms, which are responsible for the pathophysiology of COVID-19 infection. The present study investigated the potential of isolated compounds from Clerodendrum volubile leaves to stall oxidative bursts in vitro and interact with ORF8 mRNA segments of the SARS-CoV-2 whole genome using computational tools. Five compounds, namely, harpagide, 1-(3-methyl-2-butenoxy)-4-(1-propenyl)benzene, ajugoside, iridoid glycoside and erucic acid, were isolated from C. volubile leaves, and their structures were elucidated using conventional spectroscopy tools. Iridoid glycoside is being reported for the first time and is thus regarded as a new compound. The ORF8 mRNA sequences of the translation initiation sites (TIS) and translation termination sites (TTSs) encoding ORF8 amino acids were retrieved from the full genome of SARS-CoV-2. Molecular docking studies revealed strong molecular interactions of the isolated compounds with the TIS and TTS of ORF8 mRNA. Harpagide showed the strongest binding affinity for TIS, while erucic acid was the strongest for TTS. The immunomodulatory potentials of the isolated compounds were investigated on neutrophil phagocytic respiratory bursts using luminol-amplified chemiluminescence technique. The compounds significantly inhibited oxidative burst, with 1-(3-methyl-2-butenoxy)-4-(1-propenyl)benzene having the best activity. Ajugoside and erucic acid showed significant inhibitory activity on T-cell proliferation. These results indicate the potential of C. volubile compounds as immunomodulators and can be utilized to curb cytokine storms implicated in COVID-19 infection. These potentials are further corroborated by the strong interactions of the compounds with the TIS and TTS of ORF8 mRNA from the SARS-CoV-2 whole genome. Research Highlights: Five compounds including a new compound was isolated from Clerodendrum volubile leaves. The sequences of the TIS and TTS of ORF8 mRNA were retrieved from SARS-CoV-2 full genome. The isolated compounds showed potent molecular interaction with the TIS and TTS of ORF8. The isolated compounds inhibited neutrophil phagocytic respiratory oxidative bursts.