Ultrahigh‐Throughput Detection of Enzymatic Alcohol Dehydrogenase Activity in Microfluidic Droplets with a Direct Fluorogenic Assay. (13th October 2021)

• Record Type: Journal Article
• Authors: Klaus, Miriam; Zurek, Paul Jannis; Kaminski, Tomasz S.; Pushpanath, Ahir; Neufeld, Katharina; Hollfelder, Florian
• Is Part Of: Chembiochem. Volume 22:Number 23(2021)
• Page Start: 3292
• Page End: 3299
• Publication Date: 2021-10-13
• Subjects: alcohol dehydrogenase -- directed evolution -- droplet microfluidics -- functional metagenomics -- ultrahigh-throughput screening; Biochemistry -- Periodicals; Molecular biology -- Periodicals; Pharmaceutical chemistry -- Periodicals; 572
• DOI: 10.1002/cbic.202100322
• Languages: English
• ISSNs: 1439-4227

Abstract

Abstract: The exploration of large DNA libraries of metagenomic or synthetic origin is greatly facilitated by ultrahigh‐throughput assays that use monodisperse water‐in‐oil emulsion droplets as sequestered reaction compartments. Millions of samples can be generated and analysed in microfluidic devices at kHz speeds, requiring only micrograms of reagents. The scope of this powerful platform for the discovery of new sequence space is, however, hampered by the limited availability of assay substrates, restricting the functions and reaction types that can be investigated. Here, we broaden the scope of detectable biochemical transformations in droplet microfluidics by introducing the first fluorogenic assay for alcohol dehydrogenases (ADHs) in this format. We have synthesized substrates that release a pyranine fluorophore (8‐hydroxy‐1, 3, 6‐pyrenetrisulfonic acid, HPTS) when enzymatic turnover occurs. Pyranine is well retained in droplets for >6 weeks (i. e. 14‐times longer than fluorescein), avoiding product leakage and ensuring excellent assay sensitivity. Product concentrations as low as 100 nM were successfully detected, corresponding to less than one turnover per enzyme molecule on average. The potential of our substrate design was demonstrated by efficient recovery of a bona fide ADH with an >800‐fold enrichment. The repertoire of droplet screening is enlarged by this sensitive and direct fluorogenic assay to identify dehydrogenases for biocatalytic applications. Abstract : An ultrahigh throughput screening assay of alcohol dehydrogenases in microfluidic droplets becomes possible with substrates that release a pyranine fluorophore. With a 100 nM detection threshold and no appreciable leaking even after 6 weeks, less than one turnover per enzyme molecule on average is robustly detectable.