Computational modeling in nanomedicine: prediction of multiple antibacterial profiles of nanoparticles using a quantitative structure–activity relationship perturbation model. (January 2015)

• Record Type: Journal Article
• Authors: Speck-Planche, Alejandro; Kleandrova, Valeria V; Luan, Feng; DS Cordeiro, Maria Natália
• Is Part Of: Nanomedicine. Volume 10:Number 2(2015)
• Page Start: 193
• Page End: 204
• Publication Date: 2015-01
• Subjects: antibacterial activity -- moving average approach -- nanoparticle -- perturbation -- QSAR; Nanotechnology -- Periodicals; Medical technology -- Periodicals; Nanotechnology -- Therapeutic use -- Periodicals; 610.28
• DOI: 10.2217/nnm.14.96
• Languages: English
• ISSNs: 1743-5889

Abstract

Aims: We introduce the first quantitative structure–activity relationship (QSAR) perturbation model for probing multiple antibacterial profiles of nanoparticles (NPs) under diverse experimental conditions.Materials & methods: The dataset is based on 300 nanoparticles containing dissimilar chemical compositions, sizes, shapes and surface coatings. In general terms, the NPs were tested against different bacteria, by considering several measures of antibacterial activity and diverse assay times. The QSAR perturbation model was created from 69, 231 nanoparticle–nanoparticle (NP-NP) pairs, which were randomly generated using a recently reported perturbation theory approach.Results: The model displayed an accuracy rate of approximately 98% for classifying NPs as active or inactive, and a new copper–silver nanoalloy was correctly predicted by this model with consensus accuracy of 77.73%.Conclusion: Our QSAR perturbation model can be used as an efficacious tool for the virtual screening of antibacterial nanomaterials.