3D shearlet-based descriptors combined with deep features for the classification of Alzheimer's disease based on MRI data. (November 2021)

• Record Type: Journal Article
• Authors: Alinsaif, Sadiq; Lang, Jochen
• Is Part Of: Computers in biology and medicine. Volume 138(2021)
• Publication Date: 2021-11
• Subjects: Feature fusion -- Deep learning -- MRI Images -- 3D shearlets -- Texture descriptors; Medicine -- Data processing -- Periodicals; Biology -- Data processing -- Periodicals; 610.285
• DOI: 10.1016/j.compbiomed.2021.104879
• Languages: English
• ISSNs: 0010-4825

Abstract

Abstract: Alzheimer's disease (AD) is a neurodegenerative disease that afflicts millions of people worldwide. Early detection of AD is critical, as drug trials show a promising advantage to those patients with early diagnoses. In this study, magnetic resonance imaging (MRI) datasets from the Alzheimer's Disease Neuroimaging Initiative (ADNI) and The Open Access Series of Imaging Studies are used. Our method for performing the classification of AD is to combine a set of shearlet-based descriptors with deep features. A major challenge in classifying such MRI datasets is the high dimensionality of feature vectors because of the large number of slices of each MRI sample. Given the volumetric nature of the MRI data, we propose using the 3D shearlet transform (3D-ST), but we obtain the average of all directionalities, which reduces the dimensionality. On the other hand, we propose to leverage the capabilities of convolutional neural networks (CNN) to learn feature maps from stacked MRI slices, which generate a very compact feature vector for each MRI sample. The 3D-ST and CNN feature vectors are combined for the classification of AD. After the concatenation of the feature vectors, they are used to train a classifier. Alternatively, a custom CNN model is utilized, in which the descriptors are further processed end to end to obtain the classification model. Our experimental results show that the fusion of shearlet-based descriptors and deep features improves classification performance, especially on the ADNI dataset. Highlights: A fusion of 3D shearlet-based descriptors with deep features is utilized for the classification of Alzheimer's disease (AD). A custom CNN model is proposed to process the concatenated feature vectors and obtain the classification. Our techniques are trained and tested on two AD datasets (ADNI and OASIS).