Crystal structure prediction of energetic materials and a twisted arene with Genarris and GAtor. Issue 35 (10th August 2021)
- Record Type:
- Journal Article
- Title:
- Crystal structure prediction of energetic materials and a twisted arene with Genarris and GAtor. Issue 35 (10th August 2021)
- Main Title:
- Crystal structure prediction of energetic materials and a twisted arene with Genarris and GAtor
- Authors:
- Bier, Imanuel
O'Connor, Dana
Hsieh, Yun-Ting
Wen, Wen
Hiszpanski, Anna M.
Han, T. Yong-Jin
Marom, Noa - Abstract:
- Abstract : A molecular crystal structure prediction workflow, based on the random structure generator, Genarris, and the genetic algorithm (GA), GAtor, is successfully applied to two energetic materials and a chiral arene. Abstract : A molecular crystal structure prediction (CSP) workflow, based on the random structure generator, Genarris, and the genetic algorithm (GA), GAtor, is applied to the energetic materials 2, 4, 6-trinitrobenzene-1, 3, 5-triamine (TATB) and 2, 4, 6-trinitrobenzene-1, 3-diamine (DATB), and the chiral arene, 4, 5-dimethylphenanthrene. The experimental structures of all three materials are successfully generated multiple times by both Genarris and GAtor, and ranked as the most stable structures by dispersion-inclusive density functional theory (DFT) methods. For 4, 5-dimethylphenanthrene the evolutionary niching feature of GAtor helps find the experimental structure by penalizing the fitness of over-sampled regions and steering the GA to an under-explored basin. For DATB, a putative structure with a sheet packing motif, which is associated with reduced sensitivity, is found to be very close in energy to the experimental structure and could be a viable polymorph. Principal component analysis of atom-centered symmetry functions is used to compare the crystal structure landscapes of TATB and DATB. Genarris and GAtor exhibit robust performance for diverse targets with varied intermolecular interactions. This work demonstrates the potential of including CSPAbstract : A molecular crystal structure prediction workflow, based on the random structure generator, Genarris, and the genetic algorithm (GA), GAtor, is successfully applied to two energetic materials and a chiral arene. Abstract : A molecular crystal structure prediction (CSP) workflow, based on the random structure generator, Genarris, and the genetic algorithm (GA), GAtor, is applied to the energetic materials 2, 4, 6-trinitrobenzene-1, 3, 5-triamine (TATB) and 2, 4, 6-trinitrobenzene-1, 3-diamine (DATB), and the chiral arene, 4, 5-dimethylphenanthrene. The experimental structures of all three materials are successfully generated multiple times by both Genarris and GAtor, and ranked as the most stable structures by dispersion-inclusive density functional theory (DFT) methods. For 4, 5-dimethylphenanthrene the evolutionary niching feature of GAtor helps find the experimental structure by penalizing the fitness of over-sampled regions and steering the GA to an under-explored basin. For DATB, a putative structure with a sheet packing motif, which is associated with reduced sensitivity, is found to be very close in energy to the experimental structure and could be a viable polymorph. Principal component analysis of atom-centered symmetry functions is used to compare the crystal structure landscapes of TATB and DATB. Genarris and GAtor exhibit robust performance for diverse targets with varied intermolecular interactions. This work demonstrates the potential of including CSP as a part of the energetic materials development process. … (more)
- Is Part Of:
- CrystEngComm. Volume 23:Issue 35(2021)
- Journal:
- CrystEngComm
- Issue:
- Volume 23:Issue 35(2021)
- Issue Display:
- Volume 23, Issue 35 (2021)
- Year:
- 2021
- Volume:
- 23
- Issue:
- 35
- Issue Sort Value:
- 2021-0023-0035-0000
- Page Start:
- 6023
- Page End:
- 6038
- Publication Date:
- 2021-08-10
- Subjects:
- Crystals -- Periodicals
Crystal growth -- Periodicals
Crystallography -- Periodicals
Cristaux -- Périodiques
Cristaux -- Croissance -- Périodiques
Cristallographie -- Périodiques
548 - Journal URLs:
- http://pubs.rsc.org/en/journals/journalissues/ce#!issueid=ce016040&type=current ↗
http://www.rsc.org/ ↗ - DOI:
- 10.1039/d1ce00745a ↗
- Languages:
- English
- ISSNs:
- 1466-8033
- Deposit Type:
- Legaldeposit
- View Content:
- Available online (eLD content is only available in our Reading Rooms) ↗
- Physical Locations:
- British Library DSC - 3490.168000
British Library DSC - BLDSS-3PM
British Library STI - ELD Digital store - Ingest File:
- 19635.xml