A tetrahedral DNA nanorobot with conformational change in response to molecular trigger. Issue 37 (16th August 2021)

• Record Type: Journal Article
• Authors: Liu, Fengyu; Liu, Xiaoming; Shi, Qing; Maffeo, Christopher; Kojima, Masaru; Dong, Lixin; Aksimentiev, Aleksei; Huang, Qiang; Fukuda, Toshio; Arai, Tatsuo
• Is Part Of: Nanoscale. Volume 13:Issue 37(2021)
• Page Start: 15552
• Page End: 15559
• Publication Date: 2021-08-16
• Subjects: Nanoscience -- Periodicals; Nanotechnology -- Periodicals; 620.505
• DOI: 10.1039/d1nr02757c
• Languages: English
• ISSNs: 2040-3364

Abstract

Abstract : Using multiple parallel folding to aid the DOS folding into the TDN, which can respond to epithelial cell adhesion molecules (EpCAM) for a controlled conformational change. Abstract : Dynamic DNA origami nanostructures that respond to external stimuli are promising platforms for cargo delivery and nanoscale sensing. However, the low stability of such nanostructures under physiological conditions presents a major obstacle for their use in biomedical applications. This article describes a stable tetrahedral DNA nanorobot (TDN) programmed to undergo a controlled conformational change in response to epithelial cell adhesion molecule (EpCAM), a molecular biomarker specifically expressed on the circulating tumor cells. Multiresolution molecular dynamics simulations verified the overall stability of the folded TDN design and characterized local distortions in the folded structure. Atomic force microscopy and gel electrophoresis results showed that tetragonal structures are more stable than unfolded DNA origami sheets. Live cell experiments demonstrated the low cytotoxicity and target specificity of TDN. In summary, the proposed TDN can not only effectively resist nuclease catalysis but also has the potential to monitor EpCAM-positive cells precisely.