Bayesian supervised machine learning classification of neural networks with pathological perturbations. (5th October 2021)

• Record Type: Journal Article
• Authors: Levi, Riccardo; Valderhaug, Vibeke Devold; Castelbuono, Salvatore; Sandvig, Axel; Sandvig, Ioanna; Barbieri, Riccardo
• Is Part Of: Biomedical physics & engineering express. Volume 7:Number 6(2021)
• Publication Date: 2021-10-05
• Subjects: neurophysiology -- machine learning -- point process -- multi electrode array -- in vitro neural networks; Medical physics -- Periodicals; Biophysics -- Periodicals; Biomedical engineering -- Periodicals; Medical sciences -- Periodicals; 610.153
• DOI: 10.1088/2057-1976/ac2935
• Languages: English
• ISSNs: 2057-1976

Abstract

Abstract: Objective. Extraction of temporal features of neuronal activity from electrophysiological data can be used for accurate classification of neural networks in healthy and pathologically perturbed conditions. In this study, we provide an extensive approach for the classification of human in vitro neural networks with and without an underlying pathology, from electrophysiological recordings obtained using a microelectrode array (MEA) platform. Approach. We developed a Dirichlet mixture (DM) Point Process statistical model able to extract temporal features related to neurons. We then applied a machine learning algorithm to discriminate between healthy control and pathologically perturbed in vitro neural networks. Main Results. We found a high degree of separability between the classes using DM point process features (p-value <0.001 for all the features, paired t-test), which reaches 93.10 of accuracy (92.37 of ROC AUC) with the Random Forest classifier. In particular, results show a higher latency in firing for pathologically perturbed neurons (43 ± 16 ms versus 67 ± 31 ms, μ I G feature distribution). Significance. Our approach has been successful in extracting temporal features related to the neurons' behaviour, as well as distinguishing healthy from pathologically perturbed networks, including classification of responses to a transient induced perturbation.