The causes of Fanconi anemia in South Asia and the Middle East: A case series and review of the literature. Issue 7 (7th May 2021)

• Record Type: Journal Article
• Authors: Thompson, Ashley S.; Saba, Nusrat; McReynolds, Lisa J.; Munir, Saeeda; Ahmed, Parvez; Sajjad, Sumaira; Jones, Kristine; Yeager, Meredith; Donovan, Frank X.; Chandrasekharappa, Settara C.; Alter, Blanche P.; Savage, Sharon A.; Rehman, Sadia
• Is Part Of: Molecular genetics & genomic medicine. Volume 9:Issue 7(2021)
• Page Start: n/a
• Page End: n/a
• Publication Date: 2021-05-07
• Subjects: Fanconi anemia -- genetic testing -- hematopoietic cell transplantation -- inherited bone marrow failure syndrome -- population genetics; Medical genetics -- Periodicals; Genomics -- Periodicals; 616.042
• DOI: 10.1002/mgg3.1693
• Languages: English
• ISSNs: 2324-9269

Abstract

Abstract: Background: Fanconi anemia (FA) is an inherited bone marrow failure syndrome associated with characteristic dysmorphology primarily caused by biallelic pathogenic germline variants in any of 22 different DNA repair genes. There are limited data on the specific molecular causes of FA in different ethnic groups. Methods: We performed exome sequencing and copy number variant analyses on 19 patients with FA from 17 families undergoing hematopoietic cell transplantation evaluation in Pakistan. The scientific literature was reviewed, and we curated germline variants reported in patients with FA from South Asia and the Middle East. Results: The genetic causes of FA were identified in 14 of the 17 families: seven FANCA, two FANCC, one FANCF, two FANCG, and two FANCL . Homozygous and compound heterozygous variants were present in 12 and two families, respectively. Nine families carried variants previously reported as pathogenic, including two families with the South Asian FANCL founder variant. We also identified five novel likely deleterious variants in FANCA, FANCF, and FANCG in affected patients. Conclusions: Our study supports the importance of determining the genomic landscape of FA in diverse populations, in order to improve understanding of FA etiology and assist in the counseling of families. Abstract : Fanconi anemia (FA) primarily caused by biallelic pathogenic germline variants in any of 22 different DNA repair genes but there are limited data on the specific FA gene variants in cases from the Middle East and South Asia. We identified novel and known genetic causes of FA in 14 of 17 families from Pakistan. Our study supports the importance of determining the genomic landscape of FA in diverse populations, in order to improve understanding of FA etiology and assist in the counseling of families.