Computational analysis of TMPRSS2 expression in normal and SARS-CoV-2-infected human tissues. (1st September 2021)

• Record Type: Journal Article
• Authors: Cao, Wenxiu; Feng, Qiushi; Wang, Xiaosheng
• Is Part Of: Chemico-biological interactions. Volume 346(2021)
• Publication Date: 2021-09-01
• Subjects: SARS-CoV-2 -- Transmembrane serine protease 2 -- Immune signatures -- Gene expression profiles -- Pathway and gene ontology -- Gene co-expression network; Biochemistry -- Periodicals; Toxicological chemistry -- Periodicals; Biochemistry -- Periodicals; Biologie moléculaire -- Périodiques; Biochimie -- Périodiques; Toxicologie biochimique -- Périodiques; 572
• DOI: 10.1016/j.cbi.2021.109583
• Languages: English
• ISSNs: 0009-2797

Abstract

Abstract: The transmembrane serine protease 2 (TMPRSS2) is a key molecule for SARS-CoV-2 invading human host cells. To provide insights into SARS - CoV - 2 infection of various human tissues and understand the potential mechanism of SARS-CoV-2 infection, we investigated TMPRSS2 expression in various normal human tissues and SARS-CoV-2-infected human tissues. Using publicly available datasets, we performed computational analyses of TMPRSS2 expression levels in 30 normal human tissues, and compared them between males and females and between younger (ages ≤ 49 years) and older (ages > 49 years) populations in these tissues. We found that TMPRSS2 expression levels were the highest in the prostate, stomach, pancreas, lungs, small intestine, and salivary gland. The TMPRSS2 protein had relatively high expression levels in the parathyroid gland, stomach, small intestine, pancreas, kidneys, seminal vesicle, epididymis, and prostate. However, TMPRSS2 expression levels were not significantly different between females and males or between younger and older populations in these tissues. The pathways enriched in TMPRSS2 -upregulated pan-tissue were mainly involved in immune, metabolism, cell growth and proliferation, stromal signatures, and cancer and other diseases. Many cytokine genes displayed positive expression correlations with TMPRSS2 in pan-tissue, including TNF-α, IL-1, IL-2, IL-4, IL-7, IL-8, IL-12, IL-18, IFN-α, MCP-1, G-CSF, and IP-10 . We further analyzed TMPRSS2 expression levels in nasopharyngeal swabs from SARS-CoV-2-infected patients. TMPRSS2 expression levels showed no significant difference between males and females or between younger and older patients. However, they were significantly lower in SARS-CoV-2-infected than in healthy individuals and patients with other viral acute respiratory illnesses. Interestingly, TMPRSS2 expression levels were positively correlated with the enrichment levels of four immune signatures (B cells, CD8 + T cells, NK cells, and interferon response) in SARS-CoV-2-infected patients but likely to be negatively correlated with them in the normal lung tissue. Our data may provide insights into the mechanism of SARS-CoV-2 infection. Highlights: TMPRSS2 is expressed in the lungs, kidney, digestive system, and male tissues. TMPRSS2 expression is not associated with sex or ages in most human tissues. TMPRSS2 expression is lower in SARS-CoV-2-infected than in normal tissues. TMPRSS2 expression is lower in SARS-CoV-2-infected than in other virus-infected tissues. TMPRSS2 expression correlates positively with immune signatures in COVID-19 patients.