The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities. Issue Volume 49:Issue D1(2021) (29th October 2020)

• Record Type: Journal Article
• Authors: Chen, I-Min A; Chu, Ken; Palaniappan, Krishnaveni; Ratner, Anna; Huang, Jinghua; Huntemann, Marcel; Hajek, Patrick; Ritter, Stephan; Varghese, Neha; Seshadri, Rekha; Roux, Simon; Woyke, Tanja; Eloe-Fadrosh, Emiley A; Ivanova, Natalia N; Kyrpides, Nikos C
• Is Part Of: Nucleic acids research. Volume 49:Issue D1(2021)
• Page Start: D751
• Page End: D763
• Publication Date: 2020-10-29
• Subjects: Nucleic acids -- Periodicals; Molecular biology -- Periodicals; 572.805
• DOI: 10.1093/nar/gkaa939
• Languages: English
• ISSNs: 0305-1048

Abstract

Abstract: The Integrated Microbial Genomes & Microbiomes system (IMG/M: https://img.jgi.doe.gov/m/ ) contains annotated isolate genome and metagenome datasets sequenced at the DOE's Joint Genome Institute (JGI), submitted by external users, or imported from public sources such as NCBI. IMG v 6.0 includes advanced search functions and a new tool for statistical analysis of mixed sets of genomes and metagenome bins. The new IMG web user interface also has a new Help page with additional documentation and webinar tutorials to help users better understand how to use various IMG functions and tools for their research. New datasets have been processed with the prokaryotic annotation pipeline v.5, which includes extended protein family assignments.