Large‐Range HS‐AFM Imaging of DNA Self‐Assembly through In Situ Data‐Driven Control. Issue 7 (9th May 2019)

• Record Type: Journal Article
• Authors: Nievergelt, Adrian P.; Kammer, Christoph; Brillard, Charlène; Kurisinkal, Eva; Bastings, Maartje M. C.; Karimi, Alireza; Fantner, Georg E.
• Is Part Of: Small methods. Volume 3:Issue 7(2019)
• Page Start: n/a
• Page End: n/a
• Publication Date: 2019-05-09
• Subjects: control system design -- DNA nanotechnology -- high‐speed atomic force microscopy -- resonance compensation -- self‐assembly; Nanotechnology -- Methodology -- Periodicals; Nanotechnology -- Periodicals; Periodicals; 620.5028
• DOI: 10.1002/smtd.201900031
• Languages: English
• ISSNs: 2366-9608

Abstract

Abstract: Understanding hierarchical self‐assembly of biological structures requires real‐time measurement of the self‐assembly process over a broad range of length‐ and timescales. The success of high‐speed atomic force microscopy (HS‐AFM) in imaging small‐scale molecular interactions has fueled attempts to introduce this method as a routine technique for studying biological and artificial self‐assembly processes. Current state‐of‐the‐art HS‐AFM scanners achieve their high imaging speed by trading achievable field of view for bandwidth. This limits their suitability when studying larger biological structures. In ambient conditions, large‐range scanners with lower resonance frequencies offer a solution when combined with first principle model–based schemes. For imaging molecular self‐assembly processes in fluid, however, such traditional control techniques are less suited. In liquid, the time‐varying changes in the behavior of the complex system necessitate frequent update of the compensating controller. Recent developments in data‐driven control theory offer a model‐free, automatable approach to compensate the complex system behavior and its changes. Here, a data‐driven control design method is presented to extend the imaging speed of a conventional AFM tube scanner by one order of magnitude. This enables the recording of the self‐assembly process of DNA tripods into a hexagonal lattice at multiple length scales. Abstract : A new control strategy for high‐speed atomic force microscopy allows observation of dynamic surface‐driven self‐assembly over a wide range of size scales. Using minimal user interaction, the method results in a typical increase of an order of magnitude in imaging speed on almost any atomic force microscopy scanner design.