A bin and hash method for analyzing reference data and descriptors in machine learning potentials. Issue 3 (22nd April 2021)

• Record Type: Journal Article
• Authors: Paleico, Martín Leandro; Behler, Jörg
• Is Part Of: Machine learning: science and technology. Volume 2:Issue 3(2021)
• Publication Date: 2021-04-22
• Subjects: machine learning -- dataset -- algorithm -- atomic fingerprint -- neural network potential; 006.31
• DOI: 10.1088/2632-2153/abe663
• Languages: English
• ISSNs: 2632-2153

Abstract

Abstract: In recent years the development of machine learning potentials (MLPs) has become a very active field of research. Numerous approaches have been proposed, which allow one to perform extended simulations of large systems at a small fraction of the computational costs of electronic structure calculations. The key to the success of modern MLPs is the close-to first principles quality description of the atomic interactions. This accuracy is reached by using very flexible functional forms in combination with high-level reference data from electronic structure calculations. These data sets can include up to hundreds of thousands of structures covering millions of atomic environments to ensure that all relevant features of the potential energy surface are well represented. The handling of such large data sets is nowadays becoming one of the main challenges in the construction of MLPs. In this paper we present a method, the bin-and-hash (BAH) algorithm, to overcome this problem by enabling the efficient identification and comparison of large numbers of multidimensional vectors. Such vectors emerge in multiple contexts in the construction of MLPs. Examples are the comparison of local atomic environments to identify and avoid unnecessary redundant information in the reference data sets that is costly in terms of both the electronic structure calculations as well as the training process, the assessment of the quality of the descriptors used as structural fingerprints in many types of MLPs, and the detection of possibly unreliable data points. The BAH algorithm is illustrated for the example of high-dimensional neural network potentials using atom-centered symmetry functions for the geometrical description of the atomic environments, but the method is general and can be combined with any current type of MLP.