High rates of fuel consumption are not required by insulating motifs to suppress retroactivity in biochemical circuits. Issue 2 (14th December 2017)

• Record Type: Journal Article
• Authors: Deshpande, Abhishek; Ouldridge, Thomas E.
• Is Part Of: Engineering biology. Volume 1:Issue 2(2017)
• Page Start: 86
• Page End: 99
• Publication Date: 2017-12-14
• Subjects: biochemistry -- biotechnology -- biomolecular electronics -- molecular biophysics; fuel consumption -- insulating motifs -- retroactivity -- biochemical circuits -- complex functional networks -- signal transduction; Bioengineering -- Periodicals; Bioengineering; Periodicals; 660.605
• DOI: 10.1049/enb.2017.0017
• Languages: English
• ISSNs: 2398-6182

Abstract

Abstract : Retroactivity arises when the coupling of a molecular network U to a downstream network D results in signal propagation back from D to U . The phenomenon represents a breakdown in modularity of biochemical circuits and hampers the rational design of complex functional networks. Considering simple models of signal‐transduction architectures, the authors demonstrate the strong dependence of retroactivity on the properties of the upstream system, and explore the cost and efficacy of fuel‐consuming insulating motifs that can mitigate retroactive effects. They find that simple insulating motifs can suppress retroactivity at a low fuel cost by coupling only weakly to the upstream system U . However, this design approach reduces the signalling network's robustness to perturbations from leak reactions, and potentially compromises its ability to respond to rapidly varying signals.