Sequential experimental design for predator–prey functional response experiments. Issue 166 (27th May 2020)

• Record Type: Journal Article
• Authors: Moffat, Hayden; Hainy, Markus; Papanikolaou, Nikos E.; Drovandi, Christopher
• Is Part Of: Journal of the Royal Society interface. Volume 17:Issue 166(2020)
• Publication Date: 2020-05-27
• Subjects: optimal experimental design -- mutual information -- sequential Monte Carlo -- model discrimination -- total entropy; Physical sciences -- Research -- Periodicals; Life sciences -- Research -- Periodicals; Interdisciplinary research -- Periodicals; 570.5
• DOI: 10.1098/rsif.2020.0156
• Languages: English
• ISSNs: 1742-5689

Abstract

Abstract : Understanding functional response within a predator–prey dynamic is a cornerstone for many quantitative ecological studies. Over the past 60 years, the methodology for modelling functional response has gradually transitioned from the classic mechanistic models to more statistically oriented models. To obtain inferences on these statistical models, a substantial number of experiments need to be conducted. The obvious disadvantages of collecting this volume of data include cost, time and the sacrificing of animals. Therefore, optimally designed experiments are useful as they may reduce the total number of experimental runs required to attain the same statistical results. In this paper, we develop the first sequential experimental design method for predator–prey functional response experiments. To make inferences on the parameters in each of the statistical models we consider, we use sequential Monte Carlo, which is computationally efficient and facilitates convenient estimation of important utility functions. It provides coverage of experimental goals including parameter estimation, model discrimination as well as a combination of these. The results of our simulation study illustrate that for predator–prey functional response experiments sequential design outperforms static design for our experimental goals. R code for implementing the methodology is available via https://github.com/haydenmoffat/sequential_design_for_predator_prey_experiments .