23Na MRI in ischemic stroke: Acquisition time reduction using postprocessing with convolutional neural networks. (21st January 2021)

• Record Type: Journal Article
• Authors: Adlung, Anne; Paschke, Nadia K.; Golla, Alena‐Kathrin; Bauer, Dominik; Mohamed, Sherif A.; Samartzi, Melina; Fatar, Marc; Neumaier‐Probst, Eva; Zöllner, Frank G.; Schad, Lothar R.
• Is Part Of: NMR in biomedicine. Volume 34:Number 4(2021)
• Page Start: n/a
• Page End: n/a
• Publication Date: 2021-01-21
• Subjects: 23Na MRI -- acquisition time reduction -- CNN -- k‐space undersampling -- quantitative MRI; Nuclear magnetic resonance -- Periodicals; Magnetic Resonance Spectroscopy -- Periodicals; 574
• DOI: 10.1002/nbm.4474
• Languages: English
• ISSNs: 0952-3480

Abstract

Abstract: Quantitative 23 Na magnetic resonance imaging (MRI) provides tissue sodium concentration (TSC), which is connected to cell viability and vitality. Long acquisition times are one of the most challenging aspects for its clinical establishment. K‐space undersampling is an approach for acquisition time reduction, but generates noise and artifacts. The use of convolutional neural networks (CNNs) is increasing in medical imaging and they are a useful tool for MRI postprocessing. The aim of this study is 23 Na MRI acquisition time reduction by k‐space undersampling. CNNs were applied to reduce the resulting noise and artifacts. A retrospective analysis from a prospective study was conducted including image datasets from 46 patients (aged 72 ± 13 years; 25 women, 21 men) with ischemic stroke; the 23 Na MRI acquisition time was 10 min. The reconstructions were performed with full dataset (FI) and with a simulated dataset an image that was acquired in 2.5 min (RI). Eight different CNNs with either U‐Net–based or ResNet‐based architectures were implemented with RI as input and FI as label, using batch normalization and the number of filters as varying parameters. Training was performed with 9500 samples and testing included 400 samples. CNN outputs were evaluated based on signal‐to‐noise ratio (SNR) and structural similarity (SSIM). After quantification, TSC error was calculated. The image quality was subjectively rated by three neuroradiologists. Statistical significance was evaluated by Student's t‐test. The average SNR was 21.72 ± 2.75 (FI) and 10.16 ± 0.96 (RI). U‐Nets increased the SNR of RI to 43.99 and therefore performed better than ResNet. SSIM of RI to FI was improved by three CNNs to 0.91 ± 0.03. CNNs reduced TSC error by up to 15%. The subjective rating of CNN‐generated images showed significantly better results than the subjective image rating of RI. The acquisition time of 23 Na MRI can be reduced by 75% due to postprocessing with a CNN on highly undersampled data. Abstract : Aim of this study is 23 Na MRI acquisition time reduction by kspace undersampling with postprocessing of CNNs. We included datasets from 46 patients with ischemic stroke. Different CNNs with varying architectures and parameters were implemented. Training was performed with 9, 500 samples and testing included 400 samples.CNNs reduced the tissue sodium quantification error by up to 15%. Acquisition time of 23 Na MRI can be reduced by 75% with CNN postprocessing on highly undersampled data.