Engineering DNA-Templated Nonribosomal Peptide Synthesis. Issue 2 (18th February 2021)

• Record Type: Journal Article
• Authors: Huang, Hsin-Mei; Stephan, Philipp; Kries, Hajo
• Is Part Of: Cell chemical biology. Volume 28:Issue 2(2021)
• Page Start: 221
• Page End: 227.e7
• Publication Date: 2021-02-18
• Subjects: enzyme cascade -- nonribosomal peptide synthesis -- gramicidin S -- DNA-templated synthesis -- zinc finger -- substrate channeling -- docking domain; Biochemistry -- Periodicals; 572.05
• DOI: 10.1016/j.chembiol.2020.11.004
• Languages: English
• ISSNs: 2451-9456

Abstract

Summary: Diffusive escape of intermediates limits the rate enhancement that nanocontainers or macromolecular scaffolds can provide for artificial biocatalytic cascades. Nonribosomal peptide synthetases (NRPSs) naturally form gigantic assembly lines and prevent escape by covalently tethering intermediates. Here, we have built DNA-templated NRPS (DT-NRPS) by adding zinc-finger tags to split NRPS modules. The zinc fingers direct the NRPS modules to 9-bp binding sites on a DNA strand, where they form a catalytically active enzyme cascade. Geometric constraints of the DT-NRPSs were investigated using the template DNA as a molecular ruler. Up to four DT-NRPS modules were assembled on DNA to synthesize peptides. DT-NRPSs outperform previously reported DNA-templated enzyme cascades in terms of DNA acceleration, which demonstrates that covalent intermediate channeling is possible along the DNA template. Attachment of assembly line enzymes to a DNA scaffold is a promising catalytic strategy for the sequence-controlled biosynthesis of nonribosomal peptides and other polymers. Graphical Abstract: Highlights: Nonribosomal peptide synthetase modules are assembled on DNA using zinc-finger tags Affinity-reduced docking domains connect modules to make synthesis DNA dependent Up to four nonribosomal modules synthesize peptide on DNA The DNA helix causes oscillating enzyme activity upon spacer length variation Abstract : Huang et al. have engineered modules of a nonribosomal peptide synthetase to become DNA dependent. Each module has its own zinc-finger domain guiding it to a specific binding site on the DNA template. This is the first step toward an enzymatic, DNA-programmable peptide synthesizer.