Chromosome-level reference genome of the European wasp spider Argiope bruennichi: a resource for studies on range expansion and evolutionary adaptation. Issue 1 (7th January 2021)

• Record Type: Journal Article
• Authors: Sheffer, Monica M; Hoppe, Anica; Krehenwinkel, Henrik; Uhl, Gabriele; Kuss, Andreas W; Jensen, Lars; Jensen, Corinna; Gillespie, Rosemary G; Hoff, Katharina J; Prost, Stefan
• Is Part Of: GigaScience. Volume 10:Issue 1(2021)
• Publication Date: 2021-01-07
• Subjects: Argiope bruennichi -- genome assembly -- Araneae -- spider -- PacBio -- Hi-C -- chromosome-level -- Hox duplication -- silk -- venom; Information storage and retrieval systems -- Research -- Periodicals; Biology -- Research -- Periodicals; Medical sciences -- Research -- Periodicals; Database management -- Periodicals; 570.285
• DOI: 10.1093/gigascience/giaa148
• Languages: English
• ISSNs: 2047-217X

Abstract

Abstract: Background: Argiope bruennichi, the European wasp spider, has been investigated intensively as a focal species for studies on sexual selection, chemical communication, and the dynamics of rapid range expansion at a behavioral and genetic level. However, the lack of a reference genome has limited insights into the genetic basis for these phenomena. Therefore, we assembled a high-quality chromosome-level reference genome of the European wasp spider as a tool for more in-depth future studies. Findings: We generated, de novo, a 1.67 Gb genome assembly of A. bruennichi using 21.8× Pacific Biosciences sequencing, polished with 19.8× Illumina paired-end sequencing data, and proximity ligation (Hi-C)-based scaffolding. This resulted in an N50 scaffold size of 124 Mb and an N50 contig size of 288 kb. We found 98.4% of the genome to be contained in 13 scaffolds, fitting the expected number of chromosomes (n = 13). Analyses showed the presence of 91.1% of complete arthropod BUSCOs, indicating a high-quality assembly. Conclusions: We present the first chromosome-level genome assembly in the order Araneae. With this genomic resource, we open the door for more precise and informative studies on evolution and adaptation not only in A. bruennichi but also in arachnids overall, shedding light on questions such as the genomic architecture of traits, whole-genome duplication, and the genomic mechanisms behind silk and venom evolution.