Bayesian regularization for flexible baseline hazard functions in Cox survival models. Issue 1 (3rd September 2020)

• Record Type: Journal Article
• Authors: Lázaro, Elena; Armero, Carmen; Alvares, Danilo
• Is Part Of: Biometrical journal. Volume 63:Issue 1(2021)
• Page Start: 7
• Page End: 26
• Publication Date: 2020-09-03
• Subjects: correlated prior process -- cubic B‐splines -- piecewise functions -- survival analysis -- Weibull distribution; Biometry -- Periodicals; Medical statistics -- Periodicals; 570.15195
• DOI: 10.1002/bimj.201900211
• Languages: English
• ISSNs: 0323-3847

Abstract

Abstract: Fully Bayesian methods for Cox models specify a model for the baseline hazard function. Parametric approaches generally provide monotone estimations. Semi‐parametric choices allow for more flexible patterns but they can suffer from overfitting and instability. Regularization methods through prior distributions with correlated structures usually give reasonable answers to these types of situations. We discuss Bayesian regularization for Cox survival models defined via flexible baseline hazards specified by a mixture of piecewise constant functions and by a cubic B‐spline function. For those "semi‐parametric" proposals, different prior scenarios ranging from prior independence to particular correlated structures are discussed in a real study with microvirulence data and in an extensive simulation scenario that includes different data sample and time axis partition sizes in order to capture risk variations. The posterior distribution of the parameters was approximated using Markov chain Monte Carlo methods. Model selection was performed in accordance with the deviance information criteria and the log pseudo‐marginal likelihood. The results obtained reveal that, in general, Cox models present great robustness in covariate effects and survival estimates independent of the baseline hazard specification. In relation to the "semi‐parametric" baseline hazard specification, the B‐splines hazard function is less dependent on the regularization process than the piecewise specification because it demands a smaller time axis partition to estimate a similar behavior of the risk.