A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination. Issue 11 (1st October 2020)

• Record Type: Journal Article
• Authors: Song, Jianxiao; Klümper, Uli; Riber, Leise; Dechesne, Arnaud; Smets, Barth F; Sørensen, Søren J; Brandt, Kristian K
• Is Part Of: FEMS microbiology ecology. Volume 96:Issue 11(2020)
• Publication Date: 2020-10-01
• Subjects: Conjugal plasmid transfer -- copper -- horizontal gene transfer -- plasmid permissiveness -- soil bacterial community -- transconjugants; Microbial ecology -- Periodicals; Microbiology -- Periodicals; 579.17
• DOI: 10.1093/femsec/fiaa200
• Languages: English
• ISSNs: 0168-6496

Abstract

ABSTRACT: Stressors like metals or antibiotics can affect bacterial community permissiveness for plasmid uptake, but there is little knowledge about long-term effects of such stressors on the evolution of community permissiveness. We assessed the effect of more than 90 years of soil Cu contamination on bacterial community permissiveness (i.e. uptake ability) toward a gfp -tagged IncP-1 plasmid (pKJK5) introduced via an Escherichia coli donor. Plasmid transfer events from the donor to the recipient soil bacterial community were quantified and transconjugants were subsequently isolated by fluorescence activated cell sorting and identified by 16S rRNA gene amplicon sequencing. Transfer frequency of plasmid pKJK5 was reduced in bacterial communities extracted from highly Cu contaminated (4526 mg kg −1 ) soil compared to corresponding communities extracted from moderately (458 mg kg −1 ) Cu contaminated soil and a low Cu reference soil (15 mg kg −1 ). The taxonomic composition of the transconjugal pools showed remarkable similarities irrespective of the degree of soil Cu contamination and despite contrasting compositions of the extracted recipient communities and the original soil communities. Permissiveness assessed at the level of individual operational taxonomic units (OTUs; 16S rRNA gene 97% sequence similarity threshold) was only slightly affected by soil Cu level and high replicate variability of OTU-level permissiveness indicated a role of stochastic events in IncP-1 plasmid transfer or strain-to-strain permissiveness variability. Abstract : Long term Cu contamination alters soil bacterial community structure, but has little effect on the effective recipient pool for an exogenously introduced IncP plasmid.