First Complete Genome Sequences of Janthinobacterium lividum EIF1 and EIF2 and Their Comparative Genome Analysis. (13th July 2020)

• Record Type: Journal Article
• Authors: Friedrich, Ines; Hollensteiner, Jacqueline; Schneider, Dominik; Poehlein, Anja; Hertel, Robert; Daniel, Rolf
• Editors: Ochman, Howard
• Is Part Of: Genome biology and evolution. Volume 12:Number 10(2020)
• Page Start: 1782
• Page End: 1788
• Publication Date: 2020-07-13
• Subjects: Janthinobacterium lividum -- secondary metabolites -- violacein operon -- antimicrobial -- antifungal -- xenoamicin; Genomics -- Periodicals; Genes -- Periodicals; 572.8605
• DOI: 10.1093/gbe/evaa148
• Languages: English
• ISSNs: 1759-6653

Abstract

Abstract: We present the first two complete genomes of the Janthinobacterium lividum species, namely strains EIF1 and EIF2, which both possess the ability to synthesize violacein. The violet pigment violacein is a secondary metabolite with antibacterial, antifungal, antiviral, and antitumoral properties. Both strains were isolated from environmental oligotrophic water ponds in Göttingen. The strains were phylogenetically classified by average nucleotide identity (ANI) analysis and showed a species assignment to J. lividum with 97.72% (EIF1) and 97.66% (EIF2) identity. These are the first complete genome sequences of strains belonging to the species J. lividum . The genome of strain EIF1 consists of one circular chromosome (6, 373, 589 bp) with a GC-content of 61.98%. The genome contains 5, 551 coding sequences, 122 rRNAs, 93 tRNAs, and 1 tm-RNA. The genome of EIF2 comprises one circular chromosome (6, 399, 352 bp) with a GC-content of 61.63% and a circular plasmid p356839 (356, 839 bp) with a GC-content of 57.21%. The chromosome encodes 5, 691 coding sequences, 122 rRNAs, 93 tRNAs, and 1 tm-RNA and the plasmid harbors 245 coding sequences. In addition to the highly conserved chromosomally encoded violacein operon, the plasmid comprises a nonribosomal peptide synthetase cluster with similarity to xenoamicin, which is a bioactive compound effective against protozoan parasites.