Correlation-Centric Network (CCN) representation for microbial co-occurrence patterns: new insights for microbial ecology. Issue 2 (25th June 2020)

• Record Type: Journal Article
• Authors: Yang, Pengshuo; Tan, Chongyang; Han, Maozhen; Cheng, Lin; Cui, Xuefeng; Ning, Kang
• Is Part Of: NAR genomics and bioinformatics. Volume 2:Issue 2(2020)
• Publication Date: 2020-06-25
• Subjects: Genomics -- Periodicals; Bioinformatics -- Periodicals; 572.8
• DOI: 10.1093/nargab/lqaa042
• Languages: English
• ISSNs: 2631-9268

Abstract

Abstract: Mainstream studies of microbial community focused on critical organisms and their physiology. Recent advances in large-scale metagenome analysis projects initiated new researches in the complex correlations between large microbial communities. Specifically, previous studies focused on the nodes (i.e. species) of the Species-Centric Networks (SCNs). However, little was understood about the change of correlation between network members (i.e. edges of the SCNs) when the network was disturbed. Here, we introduced a Correlation-Centric Network (CCN) to the microbial research based on the concept of edge networks. In CCN, each node represented a species–species correlation, and edge represented the species shared by two correlations. In this research, we investigated the CCNs and their corresponding SCNs on two large cohorts of microbiome. The results showed that CCNs not only retained the characteristics of SCNs, but also contained information that cannot be detected by SCNs. In addition, when the members of microbial communities were decreased (i.e. environmental disturbance), the CCNs fluctuated within a small range in terms of network connectivity. Therefore, by highlighting the important species correlations, CCNs could unveil new insights when studying not only the functions of target species, but also the stabilities of their residing microbial communities.