Strategies for the identification of disease-related patterns of volatile organic compounds: prediction of paratuberculosis in an animal model using random forests. (1st November 2017)

• Record Type: Journal Article
• Authors: Kasbohm, Elisa; Fischer, Sina; Küntzel, Anne; Oertel, Peter; Bergmann, Andreas; Trefz, Phillip; Miekisch, Wolfram; Schubert, Jochen K; Reinhold, Petra; Ziller, Mario; Fröhlich, Andreas; Liebscher, Volkmar; Köhler, Heike
• Is Part Of: Journal of breath research. Volume 11:Number 4(2017:Dec.)
• Publication Date: 2017-11-01
• Subjects: biomarker discovery -- effect size -- exhaled breath -- faeces -- paratuberculosis -- random forest -- volatile organic compound (VOC); Volatile organic compounds -- Analysis -- Periodicals; Clinical chemistry -- Periodicals; Bad breath -- Periodicals; Bad breath -- Treatment -- Periodicals; Bad breath -- Diagnosis -- Periodicals; 616.0756
• DOI: 10.1088/1752-7163/aa83bb
• Languages: English
• ISSNs: 1752-7155

Abstract

Abstract: Modern statistical methods which were developed for pattern recognition are increasingly being used for data analysis in studies on emissions of volatile organic compounds (VOCs). With the detection of disease-related VOC profiles, novel non-invasive diagnostic tools could be developed for clinical applications. However, it is important to bear in mind that not all statistical methods are equally suitable for the investigation of VOC profiles. In particular, univariate methods are not able to discover VOC patterns as they consider each compound separately. The present study demonstrates this fact in practice. Using VOC samples from a controlled animal study on paratuberculosis, the random forest classification method was applied for pattern recognition and disease prediction. This strategy was compared with a prediction approach based on single compounds. Both methods were framed within a cross-validation procedure. A comparison of both strategies based on these VOC data reveals that random forests achieves higher sensitivities and specificities than predictions based on single compounds. Therefore, it will most likely be more fruitful to further investigate VOC patterns instead of single biomarkers for paratuberculosis. All methods used are thoroughly explained to aid the transfer to other data analyses.