A snapshot of 3649 Web-based services published between 1994 and 2017 shows a decrease in availability after 2 years. (8th December 2017)

• Record Type: Journal Article
• Authors: Ősz, Ágnes; Pongor, Lőrinc Sándor; Szirmai, Danuta; Győrffy, Balázs
• Is Part Of: Briefings in bioinformatics. Volume 20:Number 3(2019)
• Page Start: 1004
• Page End: 1010
• Publication Date: 2017-12-08
• Subjects: online -- bioinformatics tools -- Web servers -- Web services -- databases -- citation analysis; Genetics -- Data processing -- Periodicals; Molecular biology -- Data processing -- Periodicals; Genomes -- Data processing -- Periodicals; 572.80285
• DOI: 10.1093/bib/bbx159
• Languages: English
• ISSNs: 1467-5463

Abstract

Abstract: Background: The long-term availability of online Web services is of utmost importance to ensure reproducibility of analytical results. However, because of lack of maintenance following acceptance, many servers become unavailable after a short period of time. Our aim was to monitor the accessibility and the decay rate of published Web services as well as to determine the factors underlying trends changes. Methods: We searched PubMed to identify publications containing Web server-related terms published between 1994 and 2017. Automatic and manual screening was used to check the status of each Web service. Kruskall–Wallis, Mann–Whitney and Chi-square tests were used to evaluate various parameters, including availability, accessibility, platform, origin of authors, citation, journal impact factor and publication year. Results: We identified 3649 publications in 375 journals of which 2522 (69%) were currently active. Over 95% of sites were running in the first 2 years, but this rate dropped to 84% in the third year and gradually sank afterwards ( P < 1e-16). The mean half-life of Web services is 10.39 years. Working Web services were published in journals with higher impact factors ( P = 4.8e-04). Services published before the year 2000 received minimal attention. The citation of offline services was less than for those online ( P = 0.022). The majority of Web services provide analytical tools, and the proportion of databases is slowly decreasing. Conclusions. Almost one-third of Web services published to date went out of service. We recommend continued support of Web-based services to increase the reproducibility of published results.