Solvent inhibition profiles and inverse solvent isotope effects for enzymatic methyl transfer catalyzed by nicotinamide N‐methyltransferase. (30th June 2020)

• Record Type: Journal Article
• Authors: Li, Yuping; Zhang, Yali; Cheng, Yiting; Du, Tianshu; Zhang, Jianyu
• Is Part Of: Journal of physical organic chemistry. Volume 33:Number 10(2020)
• Page Start: n/a
• Page End: n/a
• Publication Date: 2020-06-30
• Subjects: catalytic efficiency -- inhibition -- nicotinamide N‐methyltransferase -- solvent effect; Chemistry, Physical organic -- Periodicals; 547.1
• DOI: 10.1002/poc.4093
• Languages: English
• ISSNs: 0894-3230

Abstract

Abstract: Nicotinamide N ‐methyltransferase (NNMT) catalyzes the methyl transfer from universal methyl donor S‐adenosyl methionine (SAM) to nicotinamide (NA) to form the N ‐methylnicotinamide. This important process is related to the level of nicotinamide adenine dinucleotide (NAD + ) in vivo; thus, NNMT is regarded as an important drug target linked with various diseases. Although NNMT has been extensively studied in the area of biology and medicine, the detailed mechanism of NNMT is still not clear, especially in the aspect of the role of solvents (water) in the enzyme catalysis. Here, we have examined the effects of three common organic solvents (dimethyl sulfoxide [DMSO], methanol, and acetonitrile) and deuterated water to explore the enzymatic methyl transfer activity by NNMT (wild type [WT]) and its mutants. Competitive inhibition was detected for DMSO and acetonitrile as the solvent, and a subtle inhibitory effect was observed with methanol. Molecular docking suggested DMSO and acetonitrile compete with both cofactor and substrate. However, methanol is mainly bound to compete for the substrate. Furthermore, the activity increased when deuterated water was substituted for water with an inverse solvent isotope effect D2O k cat /Km = 0.49 ± 0.17 for WT and D2O k cat /Km = 0.32 ± 0.08 for Y20F. These effects in this enzymatic methyl transfer system without any metal ion or acid/base catalysis were due to the stabilization of protein provided by deuterated water. Abstract : The effects of solvents as the environmental factor on NNMT catalytic methyl transfer were reported. The combination of experimental and docking simulation indicated that the inhibition difference for these solvents was derived from the binding model and energy variety. It will help to understand the interaction of the environment with the protein and screen potential inhibitor by choosing the appropriate solvent.