Regulation of microtubule disassembly by spatially heterogeneous patterns of acetylation. Issue 12 (11th March 2020)

• Record Type: Journal Article
• Authors: J. S., Aparna; Padinhateeri, Ranjith; Das, Dibyendu
• Is Part Of: Soft matter. Volume 16:Issue 12(2020)
• Page Start: 3125
• Page End: 3136
• Publication Date: 2020-03-11
• Subjects: Soft condensed matter -- Periodicals; 530.413
• DOI: 10.1039/c9sm02198a
• Languages: English
• ISSNs: 1744-683X

Abstract

Abstract : This study investigates the effect of spatial patterns of acetylation on the disassembly dynamics of microtubule filaments using a multi-protofilament model. Abstract : Microtubules (MTs) are bio-polymers, composed of tubulin proteins, involved in several functions such as cell division, transport of cargoes within cells, maintaining cellular structures etc. Their kinetics are often affected by chemical modifications on the filament known as Post Translational Modifications (PTMs). Acetylation is a PTM which occurs on the luminal surface of the MT lattice and has been observed to reduce the lateral interaction between tubulins on adjacent protofilaments. Depending on the properties of the acetylase enzyme αTAT1 and the structural features of MTs, the patterns of acetylation formed on MTs are observed to be quite diverse. In this study, we present a multi-protofilament model with spatially heterogeneous patterns of acetylation, and investigate how the local kinetic differences arising from heterogeneity affect the global kinetics of MT filaments. From the computational study we conclude that a filament with spatially uniform acetylation is least stable against disassembly, while ones with more clustered acetylation patterns may provide better resistance against disassembly. The increase in disassembly times for clustered pattern as compared to uniform pattern can be up to fifty percent for identical amounts of acetylation. Given that acetylated MTs affect several cellular functions as well as diseases such as cancer, our study indicates that spatial patterns of acetylation need to be focused on, apart from the overall amount of acetylation.