Modeling the interaction between anti-cancer drug penicillamine and pristine and functionalized carbon nanotubes for medical applications: density functional theory investigation and a molecular dynamics simulation. Issue 5 (23rd March 2020)

• Record Type: Journal Article
• Authors: Shaki, Hosien; Raissi, Heidar; Mollania, Fariba; Hashemzadeh, Hassan
• Is Part Of: Journal of biomolecular structure & dynamics. Volume 38:Issue 5(2020)
• Page Start: 1322
• Page End: 1334
• Publication Date: 2020-03-23
• Subjects: DFT method -- adsorption energy -- drug delivery system -- penicillamine -- molecular dynamics simulation; Biomolecules -- Periodicals; Molecular structure -- Periodicals; Molecular Biology -- Periodicals; Biomechanics -- Periodicals; 572
• DOI: 10.1080/07391102.2019.1602080
• Languages: English
• ISSNs: 0739-1102

Abstract

Abstract: The present study focuses on the prediction and investigation of binding properties of penicillamine with pure (5, 5) single-walled carbon nanotube (SWCNT) and functionalized SWCNT ( f -SWCNT) through the B3LYP and M06-2X functionals using the 6-31G** basis set. The electronic and structural properties, adsorption energy and frontier molecular orbitals of various configurations are examined. Our theoretical results indicated that the interaction of the nanotubes with penicillamine molecule is weak so that the drug adsorption process is typically physisorption. Also, results of theoretical calculations show that the adsorption of the drug molecule on f -SWCNT is stronger with shorter intermolecular distances in comparison to pure SWCNT. The natural bond orbital (NBO) analysis of studied systems demonstrates that the charge is transferred from penicillamine molecule to the nanotubes. Furthermore, molecular dynamics (MD) simulation is employed to evaluate the dynamic and diffusion behavior of drug molecule on SWCNT and f -SWCNT. Energy results show that drug molecule spontaneously moves toward the carriers, and the van der Waals energy contributions in drug adsorption are more than electrostatic interaction. The obtained results from MD simulation confirm that the functionalization of SWCNT leads to increase in the solubility of the carrier in aqueous solution. Communicated by Ramaswamy H. Sarma