Pre‐Processing MALDI/TOF Mass Spectra by Using Geena 2. Issue 1 (13th November 2018)

• Record Type: Journal Article
• Authors: Romano, P.; Profumo, A.; Facchiano, A.
• Editors: Baxevanis, Andreas D.; Petsko, Gregory A.; Stein, Lincoln D.; Stormo, Gary D.
• Is Part Of: Current protocols in bioinformatics. Volume 64:Issue 1(2018)
• Page Start: n/a
• Page End: n/a
• Publication Date: 2018-11-13
• Subjects: mass spectrometry -- pre‐processing -- spectra alignment -- MALDI/TOF; Bioinformatics -- Laboratory manuals; Nucleotide sequence -- Laboratory manuals; Amino acid sequence -- Laboratory manuals; Base Sequence; Amino Acid Sequence; Computational Biology -- methods; Databases, Genetic; Proteins -- analysis; Sequence Analysis -- methods; Sequence Homology; Amino acid sequence; Bioinformatics; Nucleotide sequence; Laboratory Manuals; Laboratory manuals; 570.285
• DOI: 10.1002/cpbi.59
• Languages: English
• ISSNs: 1934-3396

Abstract

Abstract: Geena 2 is a tool for filtering, averaging, and aligning MALDI/TOF mass spectra, designed to assist scientists in the analysis of high volumes of data and support them for comparative studies. Three web interfaces are available with different levels of complexity. In this manuscript, we explain how to use Geena 2 with these three interfaces to perform analyses of one's own data. Two support protocols showing how to check the example input file and how to create an input file with own data are also presented. © 2018 by John Wiley & Sons, Inc.