Catheter segmentation in X-ray fluoroscopy using synthetic data and transfer learning with light U-nets. (August 2020)

• Record Type: Journal Article
• Authors: Gherardini, Marta; Mazomenos, Evangelos; Menciassi, Arianna; Stoyanov, Danail
• Is Part Of: Computer methods and programs in biomedicine. Volume 192(2020)
• Publication Date: 2020-08
• Subjects: Catheter segmentation -- Deep learning -- Fluoroscopy -- Transfer learning; Medicine -- Computer programs -- Periodicals; Biology -- Computer programs -- Periodicals; Computers -- Periodicals; Medicine -- Periodicals; Médecine -- Logiciels -- Périodiques; Biologie -- Logiciels -- Périodiques; Biology -- Computer programs; Medicine -- Computer programs; Periodicals; Electronic journals; 610.28
• DOI: 10.1016/j.cmpb.2020.105420
• Languages: English
• ISSNs: 0169-2607

Abstract

Highlights: Fully-automated, real-time catheter and guidewire segmentation in fluoroscopy using CNNs. Two-stage training strategy based on transfer learning technique, using synthetic images with predefined labelled segmentation. Methods to reduce the need of manual pixel-level labelling to facilitate the development of CNN models for semantic segmentation, especially in the medical field. Lightweight CNN model with a decreased number of network parameters which results in more efficient training and faster run times (84% reduction in testing time compared to the state-of-the-art). Abstract: Background and objectives Automated segmentation and tracking of surgical instruments and catheters under X-ray fluoroscopy hold the potential for enhanced image guidance in catheter-based endovascular procedures. This article presents a novel method for real-time segmentation of catheters and guidewires in 2d X-ray images. We employ Convolutional Neural Networks (CNNs) and propose a transfer learning approach, using synthetic fluoroscopic images, to develop a lightweight version of the U-Net architecture. Our strategy, requiring a small amount of manually annotated data, streamlines the training process and results in a U-Net model, which achieves comparable performance to the state-of-the-art segmentation, with a decreased number of trainable parameters. Methods The proposed transfer learning approach exploits high-fidelity synthetic images generated from real fluroscopic backgrounds. We implement a two-stage process, initial end-to-end training and fine-tuning, to develop two versions of our model, using synthetic and phantom fluoroscopic images independently. A small number of manually annotated in-vivo images is employed to fine-tune the deepest 7 layers of the U-Net architecture, producing a network specialized for pixel-wise catheter/guidewire segmentation. The network takes as input a single grayscale image and outputs the segmentation result as a binary mask against the background. Results Evaluation is carried out with images from in-vivo fluoroscopic video sequences from six endovascular procedures, with different surgical setups. We validate the effectiveness of developing the U-Net models using synthetic data, in tests where fine-tuning and testing in-vivo takes place both by dividing data from all procedures into independent fine-tuning/testing subsets as well as by using different in-vivo sequences. Accurate catheter/guidewire segmentation (average Dice coefficient of ~ 0.55, ~ 0.26 and ~ 0.17) is obtained with both U-Net models. Compared to the state-of-the-art CNN models, the proposed U-Net achieves comparable performance ( ± 5% average Dice coefficients) in terms of segmentation accuracy, while yielding a 84% reduction of the testing time. This adds flexibility for real-time operation and makes our network adaptable to increased input resolution. Conclusions This work presents a new approach in the development of CNN models for pixel-wise segmentation of surgical catheters in X-ray fluoroscopy, exploiting synthetic images and transfer learning. Our methodology reduces the need for manually annotating large volumes of data for training. This represents an important advantage, given that manual pixel-wise annotations is a key bottleneck in developing CNN segmentation models. Combined with a simplified U-Net model, our work yields significant advantages compared to current state-of-the-art solutions.