Enabling reusability of plant phenomic datasets with MIAPPE 1.1. Issue 1 (25th April 2020)

• Record Type: Journal Article
• Authors: Papoutsoglou, Evangelia A.; Faria, Daniel; Arend, Daniel; Arnaud, Elizabeth; Athanasiadis, Ioannis N.; Chaves, Inês; Coppens, Frederik; Cornut, Guillaume; Costa, Bruno V.; Ćwiek‐Kupczyńska, Hanna; Droesbeke, Bert; Finkers, Richard; Gruden, Kristina; Junker, Astrid; King, Graham J.; Krajewski, Paweł; Lange, Matthias; Laporte, Marie‐Angélique; Michotey, Célia; Oppermann, Markus; Ostler, Richard; Poorter, Hendrik; Ramı́rez‐Gonzalez, Ricardo; Ramšak, Živa; Reif, Jochen C.; Rocca‐Serra, Philippe; Sansone, Susanna‐Assunta; Scholz, Uwe; Tardieu, François; Uauy, Cristobal; Usadel, Björn; Visser, Richard G. F.; Weise, Stephan; Kersey, Paul J.; Miguel, Célia M.; Adam‐Blondon, Anne‐Françoise; Pommier, Cyril;
• Is Part Of: New phytologist. Volume 227:Issue 1(2020)
• Page Start: 260
• Page End: 273
• Publication Date: 2020-04-25
• Subjects: findability -- interoperability -- metadata -- phenomics -- plant phenotyping -- reusability -- standards; Botany -- Periodicals; 580
• DOI: 10.1111/nph.16544
• Languages: English
• ISSNs: 0028-646X

Abstract

Summary: Enabling data reuse and knowledge discovery is increasingly critical in modern science, and requires an effort towards standardising data publication practices. This is particularly challenging in the plant phenotyping domain, due to its complexity and heterogeneity. We have produced the MIAPPE 1.1 release, which enhances the existing MIAPPE standard in coverage, to support perennial plants, in structure, through an explicit data model, and in clarity, through definitions and examples. We evaluated MIAPPE 1.1 by using it to express several heterogeneous phenotyping experiments in a range of different formats, to demonstrate its applicability and the interoperability between the various implementations. Furthermore, the extended coverage is demonstrated by the fact that one of the datasets could not have been described under MIAPPE 1.0. MIAPPE 1.1 marks a major step towards enabling plant phenotyping data reusability, thanks to its extended coverage, and especially the formalisation of its data model, which facilitates its implementation in different formats. Community feedback has been critical to this development, and will be a key part of ensuring adoption of the standard.