An electrophoretic DNA extraction device using a nanofilter for molecular diagnosis of pathogens. Issue 8 (18th February 2020)

• Record Type: Journal Article
• Authors: Kang, Jae-Hyun; Kim, Yong Tae; Lee, Kidan; Kim, Hyun-Mi; Lee, Kyoung G.; Ahn, Junhyoung; Lee, JaeJong; Lee, Seok Jae; Kim, Ki-Bum
• Is Part Of: Nanoscale. Volume 12:Issue 8(2020)
• Page Start: 5048
• Page End: 5054
• Publication Date: 2020-02-18
• Subjects: Nanoscience -- Periodicals; Nanotechnology -- Periodicals; 620.505
• DOI: 10.1039/c9nr10675h
• Languages: English
• ISSNs: 2040-3364

Abstract

Abstract : A simple electrophoretic DNA extraction device has developed using a nanofilter for rapid and efficient DNA aquisition required for point-of-care analysis in order to prevent an epidemic/pandemic disease outbreak. Abstract : Rapid and efficient nucleic acid (NA) extraction and concentration are required for point-of-care analysis in order to prevent an epidemic/pandemic disease outbreak. Typical silica-based NA extraction methods have limitations such as being time-consuming, requiring human intervention, and resulting in a low recovery yield. In this study, we have developed a pathogenic DNA extraction device based on electrokinetic separation incorporated with a silicon nitride (SiN x ) nanofilter, which expedites the DNA extraction procedure with advantages of being convenient, efficient, and inexpensive. This DNA extraction device consists of a computer numerical control (CNC) milled-Teflon gadget with a cis -chamber as a cell lysate reservoir and a trans -chamber as a elution solution reservoir, with the SiN x nanofilter being inserted between the two chambers. The SiN x nanofilter was fabricated using a photolithographic method in conjunction with nanoimprinting. Approximately 7.2 million nanopores of 220 nm diameter were located at the center of the nanofilter. When a DC electric field is applied through the nanopores, DNA is transferred from the cis -chamber to the trans -chamber to isolate the DNA from the cell debris. To demonstrate the DNA extraction performance, we measured the absorbances at 260 and 280 nm and performed a real-time polymerase chain reaction (real-time PCR) using the recovered DNA to verify its feasibility for downstream genetic analysis. Moreover, the DNA extraction device was successfully operated using a 1.5 V alkaline battery, which verifies the portability of the device for point-of-care testing. Such an advanced DNA extraction system can be utilized in various fields including clinical analysis, pathogen detection, forensic analysis, and on-site detection.