Imputation of values above an upper detection limit in compositional data. (March 2020)

• Record Type: Journal Article
• Authors: Mikšová, D.; Filzmoser, P.; Middleton, M.
• Is Part Of: Computers & geosciences. Volume 136(2020)
• Publication Date: 2020-03
• Subjects: Environmental policy -- Periodicals; 550.5
• DOI: 10.1016/j.cageo.2019.104383
• Languages: English
• ISSNs: 0098-3004

Abstract

Abstract: Geochemical data frequently contain censored values. An imputation method for right-censored compositional data is proposed, based on the Tobit model, in order to get a complete and reliable data set. An algorithm is developed and implemented using regressions in an iterative scheme, where the imputed values are updated step-by-step. Optionally, classical least-squares or robust regressions can be carried out, with or without variable selection. The performance of the algorithm is evaluated using two real geochemical data sets, considering various different scenarios. Compared to commonly used substitution methods, the proposed method leads to an improved data quality. The procedure is available in the R package robCompositions. Highlights: Imputation of right-censored values in compositional data based on Tobit regression is proposed. Based on real data, numerical comparisons of classical least-squares and robust regression with a simple approach are made. The proposed algorithm has been implemented in the R package robCompositions .