Texture analysis and multiple-instance learning for the classification of malignant lymphomas. (March 2020)

• Record Type: Journal Article
• Authors: Lippi, Marco; Gianotti, Stefania; Fama, Angelo; Casali, Massimiliano; Barbolini, Elisa; Ferrari, Angela; Fioroni, Federica; Iori, Mauro; Luminari, Stefano; Menga, Massimo; Merli, Francesco; Trojani, Valeria; Versari, Annibale; Zanelli, Magda; Bertolini, Marco
• Is Part Of: Computer methods and programs in biomedicine. Volume 185(2020)
• Publication Date: 2020-03
• Subjects: Multiple-instance learning -- Texture analysis -- Malignant lymphomas; Medicine -- Computer programs -- Periodicals; Biology -- Computer programs -- Periodicals; Computers -- Periodicals; Medicine -- Periodicals; Médecine -- Logiciels -- Périodiques; Biologie -- Logiciels -- Périodiques; Biology -- Computer programs; Medicine -- Computer programs; Periodicals; Electronic journals; 610.28
• DOI: 10.1016/j.cmpb.2019.105153
• Languages: English
• ISSNs: 0169-2607

Abstract

Abstract : Highlights: Malignant lymphomas subtype classification with machine learning. Texture features extracted from FDG-PET volumes of interest. Multiple-instance learning SVM for patient-level categorization. Random forests exploited for feature selection. Abstract: Background and objectives: Malignant lymphomas are cancers of the immune system and are characterized by enlarged lymph nodes that typically spread across many different sites. Many different histological subtypes exist, whose diagnosis is typically based on sampling (biopsy) of a single tumor site, whereas total body examinations with computed tomography and positron emission tomography, though not diagnostic, are able to provide a comprehensive picture of the patient. In this work, we exploit a data-driven approach based on multiple-instance learning algorithms and texture analysis features extracted from positron emission tomography, to predict differential diagnosis of the main malignant lymphomas subtypes. Methods: We exploit a multiple-instance learning setting where support vector machines and random forests are used as classifiers both at the level of single VOIs (instances) and at the level of patients (bags). We present results on two datasets comprising patients that suffer from four different types of malignant lymphomas, namely diffuse large B cell lymphoma, follicular lymphoma, Hodgkin's lymphoma, and mantle cell lymphoma. Results: Despite the complexity of the task, experimental results show that, with sufficient data samples, some cancer subtypes, such as the Hodgkin's lymphoma, can be identified from texture information: in particular, we achieve a 97.0% of sensitivity (recall) and a 94.1% of predictive positive value (precision) on a dataset that consists in 60 patients. Conclusions: The presented study indicates that texture analysis features extracted from positron emission tomography, combined with multiple-instance machine learning algorithms, can be discriminating for different malignant lymphomas subtypes.